Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04628 ATGGCATCACTTTCTGTTGTCAAATTTCTGCTCTGCTTCTTTATGATATGGCTCATCAACATTCTTCCTCTATGCCAAGGTAATGAGAACAATGAATATAAGTACCCATTTATAAGAAAAGCAAGTTCATTCTCATCTCAACCATCAATTTCAACTACCAACACAAATGATGGTTATGACTACATAATAGTAGGTGGTGGTACAGCAGGGTGCCCTTTAGCTGCAACCCTTTCAAAGAGCTTCAATGTTTTGTTGCTTGAAAGAGGAGGAGTACCTTTCACAAACCCCAATGTGTCATTTCTTGACAACTTTCACATTACTTTGGCTGATACTTCACCAACTTCAGCTTCACAATTCTTCATGTCAATAGATGGAGTTTACAATGCAAGAGCAAGAGTTTTGGGTGGTGGTAGCTCCATTAATGCTGGCTTCTATACTAGAGCTAGCTCAAGATTTATACAGAAGATGGGTTGGGATGCAGAGCTAGTAAATAAGTCATATCCTTGGGTTGAAAAACAGATTGTTCATCGTCCAACATTTTCACATTGGCAGAGAGCATTGAGAGATGGTCTTCTAGATGCTGGTGTGTCTCCTTTTAATGGATTCACCTTTGAACATAAGTATGGAACCAAACTTGGTGGAACCATTTTTGACAGATTCGGTCGCCGCCACACTGCTGCTGAATTGCTTGCTTCTGGAAATCCTAACAAACTCACTGTTTTGATCTATGCCACTGTCCAAAACATTGTTTTTGATACATCAGGAAAAAGACCAAAAGCTATGGGGGTAATTTTCAAGGATGAAAATGGGAAACAACATAAGGCAATTCTAGGAAATGATAGGCAAAGTGAAGTAATTGTGTCAAGTGGAGCAATTGGGACTCCTCAAATGCTATTGCTTAGTGGAATTGGCCCAAAAGCAGAACTTGAGAAGTTGAAAATCCCTGTGGTACTTGACAACAGATTTGTTGGAAAAGGCATGGCAGATAACCCAATGAACACAATATTTGTTCCTCTTAAGAAACCAGTTAAGCAGTCACTGATAGAAACAGTTGGTATTACCAATAGGGGTGTGTATATTGAAGCTAGCAGTGGTTTTGGACAGTCCAGTGACAGCATTCACTGTCACCATGGTATGTTGTCAGCTGAGATTGGACAACTTTCCACAATTCCTCCAAAGCAAAGATCAGAAGAAGCTATTAAAGCTTTTGTGAAGAACAAAAAAGACATTCCAATTGAAGCATTTAAAGGAGGCTTCATCTTAACAAAAGTTGCAAATCCATGGTCAACAGGTGATCTCAGATTGATCAACACCAATGTGGATGACAACCCTGCTGTTACATTCAACTACTTCAGTCACCCTAACGATCTTCAACGCTGCGTCGAGGGAATCCAGTTAGTAACAAAGGTTGTTCAGTCACAGCATTTCACAAACCTTACTATGTGTGTCAGAGAAACTACAGAACAATTACTGAACAGCACTGTGAAGGCTAATGTTAACCTCATACCGAAGCATGTCAACGATATGAAATCACTACAACAATTTTGTAAAGATACTGTGATTACTATTTGGCATTATCATGGTGGATGTCATGTAGGGAAGGTTGTCGACTCGGATCATAAGGTTCTTGGCGTTAACAGACTTCGTGTCATAGATGGTTCGACATTTACTGAGTCACCAGGAACTAATCCTCAAGCTACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTTTAAGAGATAGGTTGGGGAAATTTGCTGGTGTTTAA 1773 0.3993 MASLSVVKFLLCFFMIWLINILPLCQGNENNEYKYPFIRKASSFSSQPSISTTNTNDGYDYIIVGGGTAGCPLAATLSKSFNVLLLERGGVPFTNPNVSFLDNFHITLADTSPTSASQFFMSIDGVYNARARVLGGGSSINAGFYTRASSRFIQKMGWDAELVNKSYPWVEKQIVHRPTFSHWQRALRDGLLDAGVSPFNGFTFEHKYGTKLGGTIFDRFGRRHTAAELLASGNPNKLTVLIYATVQNIVFDTSGKRPKAMGVIFKDENGKQHKAILGNDRQSEVIVSSGAIGTPQMLLLSGIGPKAELEKLKIPVVLDNRFVGKGMADNPMNTIFVPLKKPVKQSLIETVGITNRGVYIEASSGFGQSSDSIHCHHGMLSAEIGQLSTIPPKQRSEEAIKAFVKNKKDIPIEAFKGGFILTKVANPWSTGDLRLINTNVDDNPAVTFNYFSHPNDLQRCVEGIQLVTKVVQSQHFTNLTMCVRETTEQLLNSTVKANVNLIPKHVNDMKSLQQFCKDTVITIWHYHGGCHVGKVVDSDHKVLGVNRLRVIDGSTFTESPGTNPQATVMMMGRYMGLKILRDRLGKFAGV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04628 590 ProSitePatterns GMC oxidoreductases signature 2. 290 304 IPR000172 GO:0016614|GO:0050660
Trre11g04628 590 PANTHER OSJNBA0019K04.7 PROTEIN 16 584 - -
Trre11g04628 590 SUPERFAMILY FAD/NAD(P)-binding domain 51 582 IPR036188 -
Trre11g04628 590 PIRSF Alcohol_oxidase 37 588 IPR012132 GO:0050660
Trre11g04628 590 SUPERFAMILY FAD-linked reductases, C-terminal domain 327 529 - -
Trre11g04628 590 Pfam GMC oxidoreductase 59 331 IPR000172 GO:0016614|GO:0050660
Trre11g04628 590 Gene3D - 59 572 IPR036188 -
Trre11g04628 590 Pfam GMC oxidoreductase 427 573 IPR007867 GO:0016614
Trre11g04628 590 Gene3D - 176 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04628 Trre-Chr11 58018321 58024570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04628 59 583 Miscellaneous Gene Families AT5G51950 52.642 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04628 K15403 - gmx:100818122 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04628 11 58018321 58024570 Trre11g04628 11 58018321 58024570 ECH
Trre11g04628 11 58018321 58024570 Trre15g00597 15 4315207 4322190 PCT