Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04601 ATGATATTGGAAAACATCAACCCGAATGTGTATACGTTTAATACATTGGTTGATGCTTTTTTTAAGGAAGGAAAGGTAAATGAAGCGAGAAACGTGCTAGCTGTGATGATTAAAGAAGCCATTAGACTTAATGTTGTTACTTATAATTCTTTAATGGATGGATATTGCCTAGTTAAAGAAGTGAACAAGGCGAAGGGTATATTCAACGTTATGTCTGAAAGGGGAGTGACTGCTACTGTTTGGAGTTATAATATCATGATTAATGGGTTTTGTAAGAATAAAAGATTGGATGAAGCCATGAATCTCTTTAAAGAAATGCATTGCAAAAAAATTATTCCTAATGTGGTAACTTATAGTTCCCTCATTGATTGTCTGTGCAAATTGGGAAGAATATCACATGCTTTGGAGCTTGTCCATGAGATGCATGATAGAGGTCAACCACCTGATATAATTACTTACAGTTCTATATTGGATGCTTTATGCAAAAACCATCAAGTTGAAAAGGCAATTGCATTATTAACAAAAGTTAAGGACAAGGGTATTCAACCAAATATGTACACGTATACTATTTTTATCGACGGATTGTGTAAAGATGGAAGAGTAGAGGATGCAAGAAAGGTTTTTGAAGATCTTTCGGTCAAAGGCTACATTCTAGATGTTTATACATATACTGTTATGATCCAAGGGTTTTGCGACAAGGGATTGTTTGATGAAGCGTTGGCCTTGCTAACAAAAATGAAAGACAATAGTTGCATTCCAAATGCTGCAACTTATGAAATAATTATCCATTCTTTGTTTAATAAAGGTGAAAACGATAAGGCAGAGAAACTTCTACGTGAAATGATCGCGAGAGCTGGTTCGGCTACTATTGCATCTGGAAGAATTGTTGCACACAATGGAGTACTTCATGTTATATGGCCCTATAGCGGTCCTTATCGTCCTACTGAGAAGAATCTTATGGAATTTATTCACTTCTTCGAAGAACATCATGTGGATATGACAAATGTAAAAAAACATCCAGTTGATAATGATGTTGTTCCATCTCCTAATAAACCTGTGGATGAGGAGCTTCACTTTGAGAACATAGAAAACAAATGGAACAGCTCAATCCATCACCAAAAGTCAACAATGTAA 1134 0.3536 MILENINPNVYTFNTLVDAFFKEGKVNEARNVLAVMIKEAIRLNVVTYNSLMDGYCLVKEVNKAKGIFNVMSERGVTATVWSYNIMINGFCKNKRLDEAMNLFKEMHCKKIIPNVVTYSSLIDCLCKLGRISHALELVHEMHDRGQPPDIITYSSILDALCKNHQVEKAIALLTKVKDKGIQPNMYTYTIFIDGLCKDGRVEDARKVFEDLSVKGYILDVYTYTVMIQGFCDKGLFDEALALLTKMKDNSCIPNAATYEIIIHSLFNKGENDKAEKLLREMIARAGSATIASGRIVAHNGVLHVIWPYSGPYRPTEKNLMEFIHFFEEHHVDMTNVKKHPVDNDVVPSPNKPVDEELHFENIENKWNSSIHHQKSTM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Trre11g04601 377 Gene3D Tetratricopeptide repeat domain 97 214 IPR011990 GO:0005515
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Trre11g04601 377 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 109 287 - -
Trre11g04601 377 Gene3D Tetratricopeptide repeat domain 215 284 IPR011990 GO:0005515
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Trre11g04601 377 Gene3D Tetratricopeptide repeat domain 1 96 IPR011990 GO:0005515
Trre11g04601 377 NCBIfam pentatricopeptide repeat 82 115 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 186 219 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 221 255 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 257 284 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 151 184 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 46 78 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 116 149 IPR002885 -
Trre11g04601 377 NCBIfam pentatricopeptide repeat 11 44 IPR002885 -
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Trre11g04601 377 SUPERFAMILY HCP-like 50 246 - -
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Trre11g04601 377 Pfam PPR repeat family 219 266 IPR002885 -
Trre11g04601 377 Pfam PPR repeat family 80 127 IPR002885 -
Trre11g04601 377 Pfam PPR repeat family 8 56 IPR002885 -
Trre11g04601 377 Pfam PPR repeat family 156 197 IPR002885 -
Trre11g04601 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04601 Trre-Chr11 57886137 57888229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04601 48 296 Miscellaneous Gene Families AT4G11690 27.626 1.14e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04601 - - mtr:120576111 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04601 11 57886137 57888229 Trre11g04601 11 57886137 57888229 ECH
Trre15g00633 15 4623750 4627338 Trre11g04601 11 57886137 57888229 PCT