Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04541 ATGAAGGTTAGAGCTGGGTTTAGTGTGTGGCCTAATGTGAGGCAACTTTGCTTTAGAAAAGGAATTTTGTATGGATTTATGCGACTTTTTTCTACTCCCTATAAAACACTACGTGGAGGAGCTAGCCGTTCACTCAAAGTGGCTCGGTTTTGCAGTGTTGCGAATATGTCTTCCTCGTTGCAGATTGAATTGGTACCTTGTCTGAGTGACAATTATGCATACCTTTTACACGATGTTGATACGGGCACAGTTGGAGTTGTTGATCCTTCTGAAGCTTCGCCTGTCATAGATGCATTGAGCAAGAAAAATCGAAACTTGAATTACATACTCAACACCCACCATCATCATGATCACACCGGTGGAAATGTAGAACTAAAAGCAAGATATGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGGAAAGGATTCCAGGCATTGATATCCATTTGAATGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCATGTAATCGACACACCTGGTCACACTCGAGGTCACATAAGCTTCTACTTTCCGGGATCTGGGACAATCTTTACAGGGGACACTTTGTTCAGCTTATCATGTGGCAAACTCTTTGAAGGAAGCCCTGAACAGATGCAATCTTCTCTTAGAAAGATCATGTCTTTACCAGAGGATACAAGTATATACTGTGGACACGAGTACACATTGAATAATTCAAAGTTTGCATTGGCGGTCGAACCTGAAAACAAGGAACTTAAATCCTATGCTGCCCATGTGGCAAACCTTCGAAGTAAAGGCTTGCCCACGATTCCAACCACACTGAAGTTAGAAAAGGCTTGTAATCCATTTCTTCGTACATCCAGTGCCCAAATCCGGCAATCGCTAAACATTCCAGTCACCGCAGATGATGCAGAAGCCCTGGGGATCATCCGGAAAGCAAAGGATGGTTTTTAG 942 0.4342 MKVRAGFSVWPNVRQLCFRKGILYGFMRLFSTPYKTLRGGASRSLKVARFCSVANMSSSLQIELVPCLSDNYAYLLHDVDTGTVGVVDPSEASPVIDALSKKNRNLNYILNTHHHHDHTGGNVELKARYGAKVIGSGTDKERIPGIDIHLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSGTIFTGDTLFSLSCGKLFEGSPEQMQSSLRKIMSLPEDTSIYCGHEYTLNNSKFALAVEPENKELKSYAAHVANLRSKGLPTIPTTLKLEKACNPFLRTSSAQIRQSLNIPVTADDAEALGIIRKAKDGF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04541 313 PIRSF Glx 55 313 IPR017782 GO:0004416|GO:0019243
Trre11g04541 313 Pfam Metallo-beta-lactamase superfamily 73 228 IPR001279 -
Trre11g04541 313 SUPERFAMILY Metallo-hydrolase/oxidoreductase 60 312 IPR036866 -
Trre11g04541 313 FunFam Hydroxyacylglutathione hydrolase, mitochondrial 60 313 - -
Trre11g04541 313 Gene3D - 60 313 IPR036866 -
Trre11g04541 313 Hamap Hydroxyacylglutathione hydrolase [gloB]. 60 313 IPR017782 GO:0004416|GO:0019243
Trre11g04541 313 PANTHER BETA LACTAMASE DOMAIN 54 312 - -
Trre11g04541 313 SMART Lactamase_B_5a 70 228 IPR001279 -
Trre11g04541 313 CDD hydroxyacylglutathione_hydrolase_MBL-fold 65 228 IPR035680 -
Trre11g04541 313 NCBIfam hydroxyacylglutathione hydrolase 63 313 IPR017782 GO:0004416|GO:0019243
Trre11g04541 313 Pfam Hydroxyacylglutathione hydrolase C-terminus 229 313 IPR032282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04541 Trre-Chr11 57528332 57530900 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04541 K01069 - gmx:100819370 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04541 11 57528332 57530900 Trre11g04541 11 57528332 57530900 ECH
Trre11g04541 11 57528332 57530900 Trre7g03018 7 27397990 27401915 PCT