Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04488 ATGAGTGGAGTTAGATTTTTCCAAGCTATAACCGTCACAATACTTATACTATCACTCACCACCACCACCGTCCGGTCATGTCCACCGTCAGACAGGGCGGCGCTACTAGCATTCAAAGCAGCTCTTCACGAACCATATCTCGGCGTCTTCACCTCATGGACGGGTGCCGATTGCTGCCACAATTGGTACGGCGTTAGCTGCGACAAAGAATCTCGCCGCGTCGCAGATATCAACCTCCGCGGCGAATCAGAAGATCCAATCTTCCAAAAAAAACACCGTACCGGTTACATGACCGGTTACATCTCACCGTCAATCTGTAAACTCACTCGTCTCCAAAGCTTTACCGTCGCCGATTGGAAAGGTATCTCCGGCGAAATCCCTCGATGTATATCCTCTCTTCCTTTTCTCCGCATCGTCGACCTAATCGGAAACCGAATCTCCGGTAATATTCCCACCGACATCGGTAGACTTCACCGTCTAACCGTTTTCAACATCGCCGACAACGTTATCTCCGGTAACATTCCACCGTCGCTAACAAATATGAGAAGTTTAATGCATCTCGATATCCGTAATAATCGGATCTCAGGTCCCCTACCTAATGACTTCGGCAGACTTCCAATGCTGAGTCGGGCTTTACTGAGCGGTAATCAAATTACCGGTCAGATACCCGACTCAGTATCTCGTATTTACCGTCTCGCAGATCTAGATCTATCAAGAAACCAAGTTTCTGGTCCCATACCCGAATCATTGGGCAAAATGGCGGTTTTATCCACACTTAATTTGGATATGAATAAAATCTCAGGGACTATACCAATAAGTCTTTTTAATTCAGGAATAAGTGATTTAAATTTAAGCAGAAATGCTTTGGAAGGTAATATACCCGATGTGTTTGGTGTGAGATCTTATTTCACGGTTTTGGATTTGTCTTATAACCGTCTTAAAGGTCCTATTCCAAAATCAATGGCTTCTGCTTCTTATATTGGACATTTGGATTTAAGTTATAATCATTTGTGTGGTAAGATTCCTATTGGAGATCCTTTTGATCATTTGGAGGCTTCATCTTTTGTCTACAATGATTGTCTTTGTGGGAAGCCACTTAAAGCTTGTGCTTAA 1113 0.4376 MSGVRFFQAITVTILILSLTTTTVRSCPPSDRAALLAFKAALHEPYLGVFTSWTGADCCHNWYGVSCDKESRRVADINLRGESEDPIFQKKHRTGYMTGYISPSICKLTRLQSFTVADWKGISGEIPRCISSLPFLRIVDLIGNRISGNIPTDIGRLHRLTVFNIADNVISGNIPPSLTNMRSLMHLDIRNNRISGPLPNDFGRLPMLSRALLSGNQITGQIPDSVSRIYRLADLDLSRNQVSGPIPESLGKMAVLSTLNLDMNKISGTIPISLFNSGISDLNLSRNALEGNIPDVFGVRSYFTVLDLSYNRLKGPIPKSMASASYIGHLDLSYNHLCGKIPIGDPFDHLEASSFVYNDCLCGKPLKACA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04488 370 Gene3D Ribonuclease Inhibitor 94 370 IPR032675 -
Trre11g04488 370 Gene3D Ribonuclease Inhibitor 24 93 IPR032675 -
Trre11g04488 370 SUPERFAMILY L domain-like 26 367 - -
Trre11g04488 370 FunFam Nuclear pore complex protein NUP107 29 200 - -
Trre11g04488 370 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre11g04488 370 Pfam Leucine Rich Repeat 183 205 IPR001611 GO:0005515
Trre11g04488 370 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 8 116 - -
Trre11g04488 370 FunFam Calmodulin-binding receptor kinase CaMRLK 206 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04488 Trre-Chr11 57154539 57155651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04488 94 370 Receptor kinase-like Gene Family AT4G08850 32.353 5.07e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04488 - - gmx:100804739 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04488 11 57154539 57155651 Trre11g04488 11 57154539 57155651 ECH
Trre11g04488 11 57154539 57155651 Trre7g03112 7 28795032 28796186 PCT