Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04334 ATGAAGGTCGATATGCATTGTGAAGGCTGTTCTTCTAAAATCGTAAAATGCATTTACGGTTTTGAAGGCGTGGAGAAATTAGATAAAGGAGACGGAACCGGAAAATTAACCGTCACCGGAACCATTGACGCCGCGAAACTCAGAGACAAAATTGTTAGTAAAACGAAGAAGAAAGTTGAAGTTATTTCTCCTATTCTTAAGAACAATGACAAGGAGAACAAAAAATCTGACACCAAAAACAACAAACCTCATGAAAAGAAACCCAAAGAGCTTCCGTTTACGACGGCGACTTTGAAGATGGAGCTGCATTGTCAAGGATGTATTGAGAGAATTCGCAAAACTGTGTCAAAGGCAAAAGGTGTTAATCATGTGATGATTGATAAGGAGAATGAGACAGTGACTGTGAAAGGAACAATGGATGTGAAAATGTTGATGGAGAATTTGAAGAAGAGGTTTAAGAGGAAAGTTGAGGTGGTCCAACCAAAGAAGGACAAGGATAAGGAGAATGAGAAAGAAGGTAACAAAGGAGAGAAATCGGAGAATGATGGTGAGAAGAAGAAGAATAATCAGAAAGGAGGTGAAGGTGGAAACAAAAAAGGTGATGGGAATGGGAATGGTGGTGACAATAGTGCAAAAATGGAGTTTTCAACATCTGGCTATGGTTATGGATATGGTTTTTTGGGATTGGATTATGGTTATAATAATAACTATGGACAAGTTCAAATGATGCAGATGCAAGCACCACAAATGTTCAGTGATGAAAATCCAAATGCATGTTCTTTAATGTGA 789 0.3828 MKVDMHCEGCSSKIVKCIYGFEGVEKLDKGDGTGKLTVTGTIDAAKLRDKIVSKTKKKVEVISPILKNNDKENKKSDTKNNKPHEKKPKELPFTTATLKMELHCQGCIERIRKTVSKAKGVNHVMIDKENETVTVKGTMDVKMLMENLKKRFKRKVEVVQPKKDKDKENEKEGNKGEKSENDGEKKKNNQKGGEGGNKKGDGNGNGGDNSAKMEFSTSGYGYGYGFLGLDYGYNNNYGQVQMMQMQAPQMFSDENPNACSLM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04334 262 Pfam Heavy-metal-associated domain 101 156 IPR006121 GO:0046872
Trre11g04334 262 Pfam Heavy-metal-associated domain 3 54 IPR006121 GO:0046872
Trre11g04334 262 CDD HMA 5 60 IPR006121 GO:0046872
Trre11g04334 262 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 1 262 IPR044594 GO:0046872
Trre11g04334 262 MobiDBLite consensus disorder prediction 64 91 - -
Trre11g04334 262 MobiDBLite consensus disorder prediction 156 194 - -
Trre11g04334 262 MobiDBLite consensus disorder prediction 156 210 - -
Trre11g04334 262 Gene3D - 1 67 - -
Trre11g04334 262 Gene3D - 94 166 - -
Trre11g04334 262 CDD HMA 102 137 IPR006121 GO:0046872
Trre11g04334 262 SUPERFAMILY HMA, heavy metal-associated domain 94 150 IPR036163 GO:0046872
Trre11g04334 262 SUPERFAMILY HMA, heavy metal-associated domain 2 59 IPR036163 GO:0046872
Trre11g04334 262 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872
Trre11g04334 262 ProSiteProfiles Heavy-metal-associated domain profile. 93 156 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04334 Trre-Chr11 55867381 55868578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04334 - - mtr:25487861 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04334 11 55867381 55868578 Trre7g01560 7 11774147 11775417 PCT