Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04307 ATGGTAAATAGTAGTACTCGTGCTAGTCAAAAGGCTAAGGATGAAGAAAATGGGAGGGTGACTCGAAGTAGCGAGAAAGCAAAAATCAAAGCACATCCCAATGCACCGGATACAGATAGTAGTAGAAAGTCTACTAGAGAAACACCGTCAAGTACTCAGAAGTCCGAGCAAGTAGAGAAGGAAACACTACCAGCTCCTGAAGCTAGAAGGAAGTCTGAAAGGGTTGAGAAAAAGAAGACGCCGAGTCCTATGACAAAATCTGGAAAAACTAGGAATCCTTCTTCTTCTTCTTCTAGTCCTTCAGATTCTAAAAGTGCAGGGTCTTTGGGTTCAATTTCAAGGCAGAAGCTGCAAAAAGAGAAGAGTGTGAAGCAATTGACATTTGAAGCCCAGGAAGTGGCTGAAAATGAGGAACACAATGTGGGAACTTCCCATGCGAGAATAAAGAGAATGGACGCCCGTATGTATCGGTCTCTCTTTAGAGATCGAAAGAAAGATTGCCTTAGGAAATCAGATACGATTAAGTCAAATCAGAAAGGTGACAACAATAGTGGAGCCAAGATTGATGGGTTATCTAACGGAAGTTGTTCAGATATTAACGAAGTCTCAAAGAATGGTACACTTCCATCTGAAGATGACAAAGCAAACGAGACAAGAGTTGACTCTAGGTTGAGTGGGCCTATGACAAATCTAGCAGAAAATAATGCGACTCCCGGTTCATTTATACCGTCTAACACCCCAGCTTATGAGACTAGTGTGGTACCCATAAGGCTACAGTCTGATTGCTGCAGAGAGGAGACATTACCAACATTAGCGTCAGGAAATTCTATATTAGACGATGATGGCATGGTCAGTAACAATGCTGGGCTTGATGGGGGTGAAAACTTGGCACCTTCTAAGAGAAAAGTAATCACAGTGGACACGGAATCAAATGTTTCTTCCAAATTATCTAAAGGAGACAACTTGATCCCCGATGCTCTCCCTTCCAAGTTAGGTGGAAACGAGTCATGTTCCAAACGAACAAGGTTGGATTATAATCCTACAGTAAAGGAGTCATGTGACCCATGTGCAGCTGAGCATCAGGACGAAGATGATATTGAGCCAACCATGGTGCAGAAGGATAAGAGTGACCACACAAGTGGAATTGGACACCTGAAGGATAGCATTGCAGAAGACAAAAATATTCTGGCTCTTGATGTTCAAAATGATAATGAAAAAGATAGTTTAATATATAATTCCAATAAAAGTGTTGTTCAGCCGAAGGAGAAATTGTCAAGTCATATTGCCAACAGATGCAAGTCTGACCCCTATAGGTTTGTCGAGTATTGGGTTCCTGCACAGATGTCTCATGTGCAGCTTGAGCAGTATTGTGCTACTTTACTTTCAAATGCTTCAATTCTTTGCTCGTCACCCAAGATTGATTGTGTTGGGGCCATTCGTGATGTGCTTATTTCAATCCGGAAGTGTTGTAATCATCCCTATGTTAATGATCCGTCCGTGCAAACCTTACTATTCAAGGACCTTGAAGAAGTTGATTATCCGAGTGAAAAAGAAAAAGTAGTTGAGTATCTAAATGTTGGAATAAAAGCAAGTGGCAAGCTGCAACTACTTGATTCAATGCTCACAGAGTTGAGAAAAAATAACTTAAGGGCGCTCGTGCTTTTTCAGTCTATTGGAGGTTCTGGAAAGGATTCAATTGGAGATATTTTAGATGACTTCCTGCGACAAAGATTTGATGTAGATTCATTTGAAAGAATTGATAAAAGTCTTGCGCCTTCCAAGAAGCAAGCTGCCATGAAGAAATTTAATGACAAGAATAATAAGCGATTTGTTTTTCTGATGGAAACTAGTGCCTGCCTTCCTAGCATAAAATTGTCATCAATTGACACTGTTATTATATTTGATAGTGATTGGAACCCAATGAATGATATAAGATCCCTTCAAAAGATAACACTTGATTCACAGTTTCAATTGATCAAAGTGTTCCGTTTATATACAGCTTTCACTGCTGAAGAGAAAGCTTTAATTCTTGATATGCAAGATAAGACCCTGGACATAAACTGTCTAAATTCAAGCCGGGGTCTCATTCATACTCTCTTGATGTGGGGTGCTTCTCGTCTTTTTGACGAGTTGGGGGTTTCCCTTGACGGTTCAACTTCTACGTCAAGTCCTAAACCACTGCTAGAAGAAACAGTTTCAGAGTTCGCATCCTGTCTATCTGATGCTGGTGAAGATTCGGACACGAGCAACCGCTCAATTTTATCGAAAGTCCAGCAAAATGGAGGAGCCTACCGTTCCAACTTTCCTTTGCTTGGTGAACTGAAACTTGGGTCGCTGGATGAAGAGTCACCGCAAACTTTTTGGACTAAACTATTGGAGGGAAAACATTTTCAATGGAAGTACTCATGCAGTCCATCTCAGCGGAGCCGGAAGAGAGTTCATTGTTTCAATAATTTGGCAGGTGGGACCAACCCTGTGAATGAAGGCATAACAAAGAAGCGCATGAAAGTGAGCAACAATACTGTTGATCAGCCTACATCGAAATCTGAAGGTGAAAAGTTACCCACTGGAGTCAAGGCAGATATACCTCAGGATAATGATGTTCGATCCGAGAAAAACGGCAGAGTGCATGATGAGCAAAGGAGCTTACATCTTTTGCTGAAGCCACAGATTACAAAGCTCTGTGAAGTTCTTCTTCTTCCAGATAATGTCAAGAATATGGTTGACAATTTTCTTGAGTATGTTATGAACAATCACCATGTCGATAGGGAACCCGTGTCAATATTGCAGGCTTTTCAAATATCTCTGGTTTGGACTGCTGCTTCTTTGCTAAACCACAAACTTGACCACAAGGCTTCTCTTATTCTTGCGGAACAAAATTTGAATTTTGACTGTAAGAAAGGAGAGGTGGACCTCATTTATTCTATGCTGCGGTGTCTAAAGAAAATATTTTTACATCGTACAGAAAATTATAATAATACTTCTCCAAAAGCTTCTAAATCGCCGAGAGTTTCATGTACAGGAGTGGCACAAGAGGTTGAATTGTTCAAAAAAGATTTGTCCAAAAGCATTAAAAAAATTCAGAAAAAGTGTGAAAAAACGCTGAATAAGATACGCCTTATGCACCAGGAAGAGAAACGAAGGTTGAGAGCGGTTAATGAACTTCAAAAGGCTGAATTGGAGAGAAAATACACAATAGAGTTAGCATTCACTCGATCCTGCTCTCCTAATGAGGTGACGAGAATAGAAATGCTCAAAATTTTGAATGTTGAACACCAAAAAAGGATCGAAGATCTAGAATTTCAGTATGAAACAAGTCTCAAAGATCTCGAGGACAAACATTCAGCTCATATAGTAAAGGTTCAAGAATGTGAGGCCACTTGGGTGGAAGATTTGAAATCTTGGGCAAAAAACGAATTGCGAAACCTAGTTGCTTTAAAGGAACGTGGGACTGGGTTTGATTACTCGCAGATGTGTGATAATGTGGTTGAATCCGTGAAAGAGACGGGGGCTGTGGTTCCTGAAACAAATTCCCTTTCAGTTGGTAAGACAGTTGAACAACAAAATTCTCTGGTCAAGCATGACAGGGCTAATGAAATGGACATTATGGTTTCAAATGATCGAGCAGTCTCTGGAAATGAGGACCATAATACAACTGAAAATCAACATGTCAGTCAGGAAAATATTCTCTCTAAACTTCCCCATTCCAGAGAGCAGAATTCTGATGGTGCTATAAGCATGACAGATGAAGCTAATAAGTGCGAAAATTTTGGCCATGAGTCTAGAGATGGTTGTGAGAAGCCTAGTTTAGATACCACGTGCTTGCCAGATTGTAGAGAACAGAATTCTGATGGTGCTACAAGCATGACAGATGAAGATAATAGGTGTGCAAATTTTGGCCATGGGTCTCAAGATGGTTGTGAGATGCCTAGTTTAGGTACCACATGCTTGCCAGATTGTGAGAATGTGACACATCCACTTCACCAGTGTTCTGATGGAGGCTCATCAAGAGTACCCGCAGGGCAAATTCCAGGTGAAGTGCAAGAAACTACTAATGTAGGGGATTCTGTAAGTGTATCAGAAAGACAGGTACAAGTTGAAATGTCTGAGGCTGTCAATTTCACTGATTGTCTGCTGCAGAATGCAACTCATCTGAATCCCCCTTCATCTGTGGCTCAAATATCCGACAGAGGTTCAATAGATGTGCCAGTTTTAGATGGTGTTTCATCATCAAGGCCTTGTCAAGCAGTTTGTTCAACCAGTTGTCGAGATACAATTTCCCTTTCAAATCCACCTTTGGAGCAACAAATACCTGATGGACTCTTGAGTATTCCTGATGGAGATATTCCTGCCACAGTGCCAGAAAACAGTCATGCAGTGGCAGATTGTCATACGGATATAGAGCCTTCAACAAATGCTATGCTGGTGGATAATAGTACCACAAATGACCAGGAGGGAGGAGTACTTGAAACTGTGACCAGTGCTCCAGTATCATCTACACCAGTTAATGTCATGGAGCCTCTAGAACAAGGGCAACAGTTGCCGTCTGTGGAGCCTGCTGCTGACAAGGATTCAGCTGTGGAGCCTCTAGAACAGGTTCAACTGGCATCTCGTCCAGCTGATATTGTACCAGCCAATCAAATCACTGTGCCTCCAAAGCAGGTGGATCAATTAGCTGCTGCAGAGCTCTCTTCCAACTTGGGTATGTTGGGTTTGTCTAATTTTCATTTAGCAACTGAAGATGAACATCAGCCGAGCAGTGTACGCGATATCCCCACTCATCATCCTGAGCCATCTTCTGTGGTTCCAAATGAAGATGTTGGGCAGCCACACTCAAATTCGGCACTTGGTTTACATTCAAATCAAGCTGCCGTGCACCCTGTCTCAAATTCAGATCTTGATTCCCTTACAGCCAGTAGAGTTAGAGCACAGTCTGCCAACCCAAGAAATTTGTCAACTCCTTTGGGGATGAATAATCATCCTATCCAATCTTCATCCCCTTCATCTTCCAGAAGGCTTCCACATTTGTCCCATGATCCCCTGAAAATTGAATTCGAAAGAATACAAAAAGTAATAGAACAAACTTCAAAAAAACATGAAGATTCGAAATTGCGGTTAAAAGCTGATTTTGAAAAGGAATTAGCGGAGCTTCGAAGAAAGTATGATGTTAAAATGCAAGAGATGGAAATTGAATTTCAGCAAACAAAGAAGACTCTGGATACAAATCTTAACACAGTTTGTGTGAATAAGTTATTGGCAGATGCTTTTAGGTCTAAATGCTTGGATCTTAAAGTACCTGGTGCTTCAGGAATGCAACATGATTCACTTCCGCAGCCGTTGCATCAACTTTCAAGTCAACAAACTGCTACTCGTTCATTAGTGGTTTCTGGTTCTTCCGGTCAGCCTCGTGCGACCAGTCTGCTGAGTCCCTCCATTGCTCCTAACTCACAGCACATGGTACCACCTGGTTACAATAAGTCAGGAACTTCCTCCGGTGTCTCTGCAAGACCACCTCTCATTAACACTACTAGGTCTTCAATCGCCCGAGATGTTCAAACTGGTGGTGAGATACGTTCCCCTGCACCACATCTCCAATCTTCTAGACCCCCAAATTCTGTTCCACCCTCCAGTTTCCATACTCTTCTACGCGGAAATCTAAGTCAGACAGCACCTAGTAACCTTCGAGCAACTTCTCCTTCGCTCCCTCATGTCCCACCCTTGCAAAGACCAACAACCCATCAGTCTAATCCACAAACGGGACACCGGCCTGACAGTGCAGGCAGATTAGCCACTCCTAACTTACCTTTCACGGGTTTACATGGGAATGTTAGCAATCAATCTACTATAGCCTCCCCAAATGTTGTTTCGCGTTTGTCAGAGGCTCCCGCTAACCTATCCACATTTGGGCCCAATAGCAGTAGCGTGGTGGCTAACTCATCACATCAAGCCGCATCTGCAGATTTAGTATGTTTATCAGATGATGACTGA 5988 0.4205 MVNSSTRASQKAKDEENGRVTRSSEKAKIKAHPNAPDTDSSRKSTRETPSSTQKSEQVEKETLPAPEARRKSERVEKKKTPSPMTKSGKTRNPSSSSSSPSDSKSAGSLGSISRQKLQKEKSVKQLTFEAQEVAENEEHNVGTSHARIKRMDARMYRSLFRDRKKDCLRKSDTIKSNQKGDNNSGAKIDGLSNGSCSDINEVSKNGTLPSEDDKANETRVDSRLSGPMTNLAENNATPGSFIPSNTPAYETSVVPIRLQSDCCREETLPTLASGNSILDDDGMVSNNAGLDGGENLAPSKRKVITVDTESNVSSKLSKGDNLIPDALPSKLGGNESCSKRTRLDYNPTVKESCDPCAAEHQDEDDIEPTMVQKDKSDHTSGIGHLKDSIAEDKNILALDVQNDNEKDSLIYNSNKSVVQPKEKLSSHIANRCKSDPYRFVEYWVPAQMSHVQLEQYCATLLSNASILCSSPKIDCVGAIRDVLISIRKCCNHPYVNDPSVQTLLFKDLEEVDYPSEKEKVVEYLNVGIKASGKLQLLDSMLTELRKNNLRALVLFQSIGGSGKDSIGDILDDFLRQRFDVDSFERIDKSLAPSKKQAAMKKFNDKNNKRFVFLMETSACLPSIKLSSIDTVIIFDSDWNPMNDIRSLQKITLDSQFQLIKVFRLYTAFTAEEKALILDMQDKTLDINCLNSSRGLIHTLLMWGASRLFDELGVSLDGSTSTSSPKPLLEETVSEFASCLSDAGEDSDTSNRSILSKVQQNGGAYRSNFPLLGELKLGSLDEESPQTFWTKLLEGKHFQWKYSCSPSQRSRKRVHCFNNLAGGTNPVNEGITKKRMKVSNNTVDQPTSKSEGEKLPTGVKADIPQDNDVRSEKNGRVHDEQRSLHLLLKPQITKLCEVLLLPDNVKNMVDNFLEYVMNNHHVDREPVSILQAFQISLVWTAASLLNHKLDHKASLILAEQNLNFDCKKGEVDLIYSMLRCLKKIFLHRTENYNNTSPKASKSPRVSCTGVAQEVELFKKDLSKSIKKIQKKCEKTLNKIRLMHQEEKRRLRAVNELQKAELERKYTIELAFTRSCSPNEVTRIEMLKILNVEHQKRIEDLEFQYETSLKDLEDKHSAHIVKVQECEATWVEDLKSWAKNELRNLVALKERGTGFDYSQMCDNVVESVKETGAVVPETNSLSVGKTVEQQNSLVKHDRANEMDIMVSNDRAVSGNEDHNTTENQHVSQENILSKLPHSREQNSDGAISMTDEANKCENFGHESRDGCEKPSLDTTCLPDCREQNSDGATSMTDEDNRCANFGHGSQDGCEMPSLGTTCLPDCENVTHPLHQCSDGGSSRVPAGQIPGEVQETTNVGDSVSVSERQVQVEMSEAVNFTDCLLQNATHLNPPSSVAQISDRGSIDVPVLDGVSSSRPCQAVCSTSCRDTISLSNPPLEQQIPDGLLSIPDGDIPATVPENSHAVADCHTDIEPSTNAMLVDNSTTNDQEGGVLETVTSAPVSSTPVNVMEPLEQGQQLPSVEPAADKDSAVEPLEQVQLASRPADIVPANQITVPPKQVDQLAAAELSSNLGMLGLSNFHLATEDEHQPSSVRDIPTHHPEPSSVVPNEDVGQPHSNSALGLHSNQAAVHPVSNSDLDSLTASRVRAQSANPRNLSTPLGMNNHPIQSSSPSSSRRLPHLSHDPLKIEFERIQKVIEQTSKKHEDSKLRLKADFEKELAELRRKYDVKMQEMEIEFQQTKKTLDTNLNTVCVNKLLADAFRSKCLDLKVPGASGMQHDSLPQPLHQLSSQQTATRSLVVSGSSGQPRATSLLSPSIAPNSQHMVPPGYNKSGTSSGVSARPPLINTTRSSIARDVQTGGEIRSPAPHLQSSRPPNSVPPSSFHTLLRGNLSQTAPSNLRATSPSLPHVPPLQRPTTHQSNPQTGHRPDSAGRLATPNLPFTGLHGNVSNQSTIASPNVVSRLSEAPANLSTFGPNSSSVVANSSHQAASADLVCLSDDD 1995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04307 1995 Coils Coil 1017 1061 - -
Trre11g04307 1995 CDD SF2_C_SNF 531 644 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 60 83 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 85 116 - -
Trre11g04307 1995 PANTHER HELICASE PROTEIN MOM1 4 1320 IPR039322 GO:0031507
Trre11g04307 1995 MobiDBLite consensus disorder prediction 826 875 - -
Trre11g04307 1995 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 700 IPR001650 -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1907 1922 - -
Trre11g04307 1995 Gene3D - 439 683 IPR027417 -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 170 244 - -
Trre11g04307 1995 Gene3D - 1678 1759 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1581 1616 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1639 1675 - -
Trre11g04307 1995 Coils Coil 1700 1727 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1864 1899 - -
Trre11g04307 1995 Gene3D - 412 438 IPR038718 -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 45 59 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1639 1673 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 833 851 - -
Trre11g04307 1995 Coils Coil 1082 1102 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 222 244 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1775 1852 - -
Trre11g04307 1995 Pfam Helicase conserved C-terminal domain 534 644 IPR001650 -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 9 44 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 177 206 - -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1772 1945 - -
Trre11g04307 1995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 676 IPR027417 -
Trre11g04307 1995 MobiDBLite consensus disorder prediction 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04307 Trre-Chr11 55608771 55621290 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04307 - K11642 tpra:123896807 3415.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04307 11 55608771 55621290 Trre11g04307 11 55608771 55621290 ECH
Trre11g04307 11 55608771 55621290 Trre7g01588 7 12031320 12042781 PCT