Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04300 ATGGAGAGAGAGAATGAGATGAAGTTATCAAAGTTTAAGACAATTTGTGTGTTTTGTGGTAGTAGTCCTGGTAACAAAACTAGCTATAAGGATGCTGCTATTGAACTTGGAAGAGAATTGGTGTCAAGAAATATTGATTTAGTTTATGGAGGAGGGAGCATTGGTTTGATGGGGTTGATTTCTCAAGCTGTTTACAATGGTGGTGGACATGTAATTGGAGTGATTCCCAAAACACTTATGCCAAGAGAGCTTACTGGAGAAACAGTAGGGGAAGTGAAGGCAGTAGCTGACATGCATCAAAGGAAAGCTGAGATGGCTAGAAATTCTGATGCCTTTATTGCCTTACCAGGTGGCTATGGGACACTTGAGGAGCTCCTTGAAGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCTGTGGGTTTGCTGAATGTTGATGGATACTACAATTCCTTTTTGTCTTTCATCGACAATGCTGTGGAGGAAGGGTTCATTAGCCCCACAGCTCGTCATATCATTGTATCTGCCCCAACACCAAAAGAGCTTGTCAAAAATATGGAGGAATATTTCCCACAACATGAAAGAGTTGCCTCCAAGCTAAGCTGGGAAAGTGAACAGCTAGATTAG 630 0.419 MERENEMKLSKFKTICVFCGSSPGNKTSYKDAAIELGRELVSRNIDLVYGGGSIGLMGLISQAVYNGGGHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARNSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLSFIDNAVEEGFISPTARHIIVSAPTPKELVKNMEEYFPQHERVASKLSWESEQLD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04300 209 NCBIfam Rossman fold protein, TIGR00730 family 13 190 IPR005269 GO:0009691|GO:0016787
Trre11g04300 209 FunFam CASP-like protein 3 189 - -
Trre11g04300 209 SUPERFAMILY MCP/YpsA-like 11 190 - -
Trre11g04300 209 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Trre11g04300 209 PANTHER LOG FAMILY PROTEIN YJL055W 1 208 - -
Trre11g04300 209 Gene3D - 2 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04300 Trre-Chr11 55543339 55547627 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04300 K22522 - gmx:100811156 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04300 11 55543339 55547627 Trre11g04300 11 55543339 55547627 ECH
Trre11g04300 11 55543339 55547627 Trre7g01593 7 12101862 12108517 PCT