Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04046 ATGAGTAACTTCGAAACCAATCCCTTCGCTGAAGAAGAGGTTAATCCTTTCGCCGATGGAGGTCCTAAAGGAAAAGCTTCAGGGCAACAAAATTATGGTGGAGGTGCATTCTACACTACTAACCCAGGAAGTGCAAAGCTCTCACCCCTTCCTCATGAGCCACATGATCGTGGGGCGACTGTTGACATTGCTCTTGATATACCAAAGGACATCAAAGCAAAGGAAAAAGAACTTCAAGCTAGAGAGGCTGAATTGAAAAGAAGAGAACAGGAGCTAAAAAGAAAGGAAGATGCTATAGCGCGAGCTGGAATAGTTATAGAGGAAAAAAATTGGCCGCCTTTTTTCCCTCTCATTCATCATGATATTGCAAAGGAAATACCGATACATCTTCAAGCGATCCAGTATGTTGCCTTTACAACATGGTTGGGTTTGATTTTTTGTCTTTCATTTAATATTGCGGCTGTTACAGTAGCTTGGCTCAAAGGAGAAGGACTGTCAATTTGGTTTCTTGCTATCATATACTTTATTTCCGGTGTTCCTGCATCCTACGTGATGTGGTATCGTCCTCTTTATCGTGCTACGAGGACGGACAGCGCGCTGAAGTTTGGCTGGTTTTTCATATGTTACTCGTTCCACATTCTGTTTTGCGTTTTGGCTGCAGTTGCACCTCCACTTGTCTTCAAAGGAAAATCTCTCACTGGTGTACTGCCTGCACTTGAGATCCTCACCTACAATCCATTGGTTGGGATACTCTACCTTGTTGGATGTGGTTTTTTCAGCATTGAATCACTGCTGAGCATATGGGTTATTCAGCAAGTATACATGTACTTCCGCGGCAGTGGGAAAGCTGCGCAAATGAAACGCGAAGCTACAATGGGGGCCATGATGCATGCTCTATGA 900 0.4389 MSNFETNPFAEEEVNPFADGGPKGKASGQQNYGGGAFYTTNPGSAKLSPLPHEPHDRGATVDIALDIPKDIKAKEKELQAREAELKRREQELKRKEDAIARAGIVIEEKNWPPFFPLIHHDIAKEIPIHLQAIQYVAFTTWLGLIFCLSFNIAAVTVAWLKGEGLSIWFLAIIYFISGVPASYVMWYRPLYRATRTDSALKFGWFFICYSFHILFCVLAAVAPPLVFKGKSLTGVLPALEILTYNPLVGILYLVGCGFFSIESLLSIWVIQQVYMYFRGSGKAAQMKREATMGAMMHAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04046 299 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 6 296 IPR007273 GO:0015031|GO:0016020
Trre11g04046 299 MobiDBLite consensus disorder prediction 1 52 - -
Trre11g04046 299 Coils Coil 71 98 - -
Trre11g04046 299 MobiDBLite consensus disorder prediction 32 46 - -
Trre11g04046 299 Pfam SCAMP family 108 279 IPR007273 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04046 Trre-Chr11 53526334 53529455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04046 61 299 Miscellaneous Gene Families AT2G20840 77.824 2.24e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04046 K19995 - gmx:100820206 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04046 11 53526334 53529455 Trre7g01217 7 8612000 8617750 PCT