Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03950 ATGAAATCATTAATCAAAACCAAATTAATTTTTCTCTCATCTTCATTATGTGCAGTTTCTCTCTTCATATTTATTTCCACATCAAAGATTGTAACATTAGACAATATTGGTTCATTTTCATCACAAGTTACACAATCTAATCCAACCAATGTTAATCATCTTGTATTTGGAATTGCTTCAAGTGGAAATTCATGGCCTAAGAGACAAAAATATGCCAAACTTTGGTGGAACAAAAAATTCAAAGGTTGTGTTTTTGTTGATAATCTTCCACATGAAGAAAATGACAACAACATTAATGTCCCTCCTCTTTGTGTCTCTGAAGATACTTCAAACTTCAACTACACTTATAGACACGGCGGATTAAGATCAGCGATTCGCGTGGCGCGAGTTGTGAAAGAAACTGTTGAATTGAACCATTCTAATGTTAGATGGTATGTGTTTGGTGATGATGACACAATTTTCTTTCCTGAGAATCTTGTTAAGACACTTTCTAAATATGATCATAGACTTTGGTACTATGTTGGTGCTTACTCTGAGAATTATGAAGGGTCACAAACTTTTGGTTTTGGAATGGCTTTTGGTGGAGGTGGTTTTGTTTTAAGTGCTTCTTTAGCAAATGTTTTAGCTAAGGTTTTTGATTCATGTATTGAAAGATATTCTCATCTTTATGGAAGTGATGCTAGAGTGTTCTCTTGCATATCAGAACTTGGTGTTGGATTAACATATGAACCAGGTTTTCATCAGGTTGATTTGAGGGGGAACATCTTTGGTCTATTGGCTGCACATCCATTAAGTCCATTGTTATCCTTACATCATCCAGATATCACTGATGCAATATTTCCTAACATGACAACATTAAAATCATTGCAACATTTATTTGAAGCTGCAAATATTGATTCTCAAAGGATTCTTCAACAAACAGTTTGCTACGAAAAACAGTTTTCGCGGACAGTTTCAGTGTCATGGGGCTATGCGGTTCAAGTATTCCAAAACAACGTGCTTTTACCGGATGTTCTTAGAGTGCAACAAACATTCAAGCCATGGAAGGAAAATCATGTTTTGGCAGGAGTGTATACTTTTAGTATAAGAGAAATTCATCATGATCCTTGTAAAAGACCTAAAATTTTCTATCTAGACAATGTATCTTCTGGTAAAGATGGCACTGTTAGCAGCTATACGAAATCTTATCAAAATTGTCCAAATGATAAGACATCATCGAAGAATCTAGAAGTGATCAAAGTTGTTACAAATAAGTTAAACCTTGACGACAAACAGAATCCAAGAAGGCAGTGTTGCGATGTGTTGAACTCTAACTCTGGTCACCTAATGGAAATTGCAATTAGAGAGTGCAAATATGAAGAATTGATATATATGCATTGA 1380 0.3478 MKSLIKTKLIFLSSSLCAVSLFIFISTSKIVTLDNIGSFSSQVTQSNPTNVNHLVFGIASSGNSWPKRQKYAKLWWNKKFKGCVFVDNLPHEENDNNINVPPLCVSEDTSNFNYTYRHGGLRSAIRVARVVKETVELNHSNVRWYVFGDDDTIFFPENLVKTLSKYDHRLWYYVGAYSENYEGSQTFGFGMAFGGGGFVLSASLANVLAKVFDSCIERYSHLYGSDARVFSCISELGVGLTYEPGFHQVDLRGNIFGLLAAHPLSPLLSLHHPDITDAIFPNMTTLKSLQHLFEAANIDSQRILQQTVCYEKQFSRTVSVSWGYAVQVFQNNVLLPDVLRVQQTFKPWKENHVLAGVYTFSIREIHHDPCKRPKIFYLDNVSSGKDGTVSSYTKSYQNCPNDKTSSKNLEVIKVVTNKLNLDDKQNPRRQCCDVLNSNSGHLMEIAIRECKYEELIYMH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03950 459 Pfam Protein of unknown function, DUF604 186 432 IPR006740 -
Trre11g03950 459 Gene3D - 41 303 - -
Trre11g03950 459 FunFam Fringe-related protein-like 41 297 - -
Trre11g03950 459 PANTHER FRINGE-RELATED 10 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03950 Trre-Chr11 52780119 52782381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03950 21 425 Glycosyltransferase AT1G05280 52.758 3.85e-154 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03950 - - gmx:100779943 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01279 7 9203802 9206106 Trre11g03950 11 52780119 52782381 PCT