Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03916 ATGGCTTCTCTTAGAGCAACAAGGTCCAAACTATTCACTCTTTCTAGAACCTTCTCTTCACCTCTCGCTCGTTCTTCTCCCGTTCGATCTCCTGCCTTCTCTTCATCCGCCGCTAACGCCGCCCGTTCCACCGTTAATCGATGGAGTCACGGCGTCCTTTGGAGATCTTCTTTCTCCCTTCGTCCTCAGATCAGAGCTGTCGCTCCTTTCATCGAACAATTTCACCGCAAGATCGCCACCTCTGCTGGTGAAAATCCTTTCAAGGGAAACTTGACGAGTCTCCCCAAGCCTGGCGGCGGTGAATTTGGAAAGTTCTATAGCCTTCCTTCTCTCAACGACCCGAGGATTGATAGGCTACCTTACTCTATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAACTTCCAAGTTACTAAACAAGATGTTGAAAAGATTATTGATTGGGAAAACACTGCTTCAAAGCAAGTTGAGATCCCTTTCAAGCCTGCTCGTGTTCTCCTTCAGGATTTTACTGGAGTCCCAGCTGTTGTTGATCTGGCTTGCATGCGTGATGCTATGAATAGGCTTGGCAGTGATTCTAATAAAATCAATCCTTTGGTTCCTGTTGATCTTGTCGTTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTTCAGGCTAATATGGAGCTTGAATTCCAGAGAAACAAGGAGAGATTTTCTTTTCTTAAATGGGGATCAACTGCTTTCCGTAATATGCTCGTTGTTCCTCCTGGTTCTGGTATAGTACACCAGGTCAATCTTGAATATCTTGGACGAGTTGTTTTCAACAATGAAGGGTTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATCGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCGATGCTTGGCCAGCCTATGAGCATGGTATTACCTGGTGTTGTTGGGTTCAAGTTGTCTGGGAAATTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTCACACAAATTCTTAGGAAACATGGTGTTGTAGGGAAATTCGTGGAATTTTATGGCAATGGTATGGGTGAATTATCATTAGCTGACAGGGCTACTATTGCCAATATGTCTCCTGAATATGGAGCAACCATGGGTTTCTTCCCCGTAGATCATGTAACATTACAATACCTCAAACTAACTGGAAGAAGTGACGAGACTGTGGCAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTGTCGACTATAATGAGCCTGAACTAGACAGAGCTTATTCATCCTATCTTGAATTGAATCTCGATGAAGTCGAACCATGTATCTCTGGACCAAAGAGACCTCATGATCGCGTGCCTTTGAAAGAAATGAAGGCTGATTGGCGTGCTTGTCTTGATAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGAAGCACAAGGCAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCTGAGCTAAAACATGGCAGCGTTGTGATTGCTGCAATCACAAGTTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCGGGTCTTGTTGCAAAGAAGGCTCATGACTTAGGGTTGAAGGTTAAGCCTTGGGTAAAAACAAGTCTTGCTCCTGGTTCAGGAGTTGTTACCAAATACCTAATTCAGAGTGGCCTACAAAAGTATCTAAATGAACAGGGTTTCAATATTGTTGGATTTGGTTGTACCACATGTATTGGCAATTCAGGGGATCTAGACGAATCAGTTTCTGCTGCTATCTCAGAAAATGACATAGTAGCGTCTGCTGTGCTGTCAGGGAACCGTAATTTTGAGGGCCGAGTGCATCCCTTGACACGCGCTAACTATCTCGCCTCACCTCCTCTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTGACATTGACTTTGAAAAGGAGCCATTGGGGACAGGAAAGGACGGCAAGAATGTCTACTTGAGGGATATTTGGCCATCCACAGAAGAAATTGCACAGACTGTCCAATCCAGTGTGCTACCTGAGATGTTCCGAAAAACATATGAATCTATTACCAAGGGTAATCCTATGTGGAATGAACTACAAGTTCCTGCTGAGAAGCTGTACTCATGGGACCCCAACTCAACATATATTCACGAGCCTCCATACTTCAAGGACATGACCATGGATCCTCCTGGACCTCATGGTGTGAAAGATGCCTATTGCCTGCTGAACTTTGGTGACAGCATAACAACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCTGCTGCAAAATACCTTGTCCAGCGCGGGGTGGAAAGGAAAGACTTCAACTCTTATGGAAGTCGTCGTGGCAACGATGAAGTTATGTCTAGGGGAACGTTTGCCAACATACGTATTGTAAACAAGCTCTTGAATGGGGAAGTGGGCCCAAAAACAGTTCACGTTCCAACAGGGGAGAAGCTTTTTGTTTTTGATGCAGCAGAGAGATACAAGGCTGCAGGGCATGACACCATTGTGATAGCTGGAGCTGAATACGGTAGTGGAAGTTCCAGGGATTGGGCCGCCAAGGGTCCCATGTTATTGGGAGTCAAAGCTGTGATCTCCAAAAGTTTTGAGAGAATTCATCGCAGTAATTTGGTAGGAATGGGTATTATTCCTCTTTGCTTCAAATCTGGCGAGGATGCTGACACCTTGGGACTGACTGGTCACGAACGTTATACCATTGACCTTCCAAATAAGATCAGCGAGATAAAGCCTGGCCAAGACGTCACTGTTACAACTGATAACGGAAAATCTTTCACCTGCACAGCTCGCTTTGACACCGAGGTGGAATTGGAGTACTTTAACCATGGAGGCATCCTTCCCTATGTCATCAGGAACCTCATTAAGCAGTGA 2937 0.4501 MASLRATRSKLFTLSRTFSSPLARSSPVRSPAFSSSAANAARSTVNRWSHGVLWRSSFSLRPQIRAVAPFIEQFHRKIATSAGENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKQDVEKIIDWENTASKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNRLGSDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFSFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGNGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFVDYNEPELDRAYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWRACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHDLGLKVKPWVKTSLAPGSGVVTKYLIQSGLQKYLNEQGFNIVGFGCTTCIGNSGDLDESVSAAISENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPLGTGKDGKNVYLRDIWPSTEEIAQTVQSSVLPEMFRKTYESITKGNPMWNELQVPAEKLYSWDPNSTYIHEPPYFKDMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLVQRGVERKDFNSYGSRRGNDEVMSRGTFANIRIVNKLLNGEVGPKTVHVPTGEKLFVFDAAERYKAAGHDTIVIAGAEYGSGSSRDWAAKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPNKISEIKPGQDVTVTTDNGKSFTCTARFDTEVELEYFNHGGILPYVIRNLIKQ 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03916 978 Gene3D Aconitase, domain 3 453 676 IPR015931 -
Trre11g03916 978 PRINTS Aconitase family signature 356 369 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 579 592 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 251 259 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 280 293 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 294 309 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 370 383 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 227 240 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 452 466 IPR001030 -
Trre11g03916 978 PRINTS Aconitase family signature 517 528 IPR001030 -
Trre11g03916 978 NCBIfam aconitate hydratase AcnA 103 976 IPR006249 -
Trre11g03916 978 Gene3D - 677 738 - -
Trre11g03916 978 FunFam Aconitate hydratase 741 977 - -
Trre11g03916 978 Pfam Aconitase family (aconitate hydratase) 145 648 IPR001030 -
Trre11g03916 978 Pfam Aconitase C-terminal domain 777 904 IPR000573 -
Trre11g03916 978 ProSitePatterns Aconitase family signature 1. 513 529 IPR018136 -
Trre11g03916 978 CDD AcnA_IRP_Swivel 754 924 IPR044137 -
Trre11g03916 978 FunFam Aconitate hydratase 85 452 - -
Trre11g03916 978 FunFam cytoplasmic aconitate hydratase 453 676 - -
Trre11g03916 978 SUPERFAMILY Aconitase iron-sulfur domain 99 713 IPR036008 -
Trre11g03916 978 Gene3D Aconitase, domain 4 741 977 IPR015928 -
Trre11g03916 978 SUPERFAMILY LeuD/IlvD-like 717 976 - -
Trre11g03916 978 ProSitePatterns Aconitase family signature 2. 579 592 IPR018136 -
Trre11g03916 978 CDD AcnA_IRP 166 650 - -
Trre11g03916 978 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 81 975 IPR006249 -
Trre11g03916 978 Gene3D Aconitase, domain 3 84 452 IPR015931 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03916 Trre-Chr11 52403523 52411032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03916 K01681 - gmx:100810088 1773.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03916 11 52403523 52411032 Trre11g03916 11 52403523 52411032 ECH
Trre11g03916 11 52403523 52411032 Trre7g01321 7 9561557 9568860 PCT