Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03887 ATGGCGGAATTCGTAAGCCCTAATCCAACAACGGTTCACAAAAAGAAGCTTCCCATTCCCGCAACAAATTTCTTCGTCGGCTCCAACGACGACCAACTCGAACGCGCCGCTGCTCGTGCTGCTCGTGCCGCTGCCATCCGCCGCACTTCCCGTGCCGTTAACTTCAACCCTCAACCCTCCGATTCTGATCCCGTTCTCAACAAGCAGCAGATTCTCGAGTTATTCCGCAATTGCATTAAGCTTGCTTCAGAAAATAAAATTAATCAGAAAAATACATGGGATTTGGATTTGATTGATCATCTTACTGATATTATTAGGGCTGACGATGATAATAATGATGCGGAAACTAATTTTCAAATGGCAAGCTGCACTCTTGAAGCTGGAGTCAAGATTTATTCATTAAGGGTGGATTCGGTGTATTCTGAGGCATATAAAGTTCTTGCTAGAATGAATAGGGCAGGCCATGAAATGGAGCAAGACACTACTCTAGAGAGTGTTAATGCTGAAGGTGGGCAAGAAGATAGCAAGAAGGGTATCATAAAAAAGTTGTCACCTGTGTCAACATTGGAATCATCTTTTGAGGTTCTTAATGTAAAGAAGTTTGATGTTGCGTTTGCTGTGGATCCCCTCTATCGCCAAACGTCAGCAAAATTTGATGAAGGGGGAGCCAATGGTCTTTTGATGAATAACCTCGGTGTATATGGTAGATGTAGGGTGCTCTTTGATTCACTAGATGTACCAGGGACATATGTAGCTAGTCAAAATGAACATGCTATTTCAGATGTAATTGATCTTTCTTTTGCAAGAGATTGTGTTGAACAGATGGTATTGGACATGGGTATTAAGGATGCGATTTCTCCAACTCTCAGGGTGATAGTAAATCAATTTGATGAAAATAATAGAAGGCCCTCCAATTTTCAATTTCATGGCCAAAACTCAGCAGAAGAGTTTGATGCAGCTATTGATTGTGAAGTTGGGGCTGAATCAGAAGAAGACCACGAGAACTTCCCAAGTTGGCCCTATGAACATGACAACCAAAGATTTGTTGCTGAACTGGGCTCTAATGACATAGACCCAAATTTTTCCAGCTATCCTCAGGAGAAAGAACCTTTTCCTTCCCAAGACCCTGAAATGGATGAAATATTTGGAAATGCTGATGAGTATCTATTTGCTAGTCTGGGTTTTAGGTCAAAGAAAAATGCATGGGCAGGTCCAGATCATTGGCAGTACCGAAAAGCTAAAGGTCCAGTGTCAGAAGTCCATTGTTCTTCTGAAGATGGGTCAACCCTCAAAACTAGGCGGCCAAGGACTATGAGACAGATCGAAGTAGATTTAAATTTCACAAATTTTCTTGGGAAAACACTTCCAGATATCTTTGCTCCTCCCAAGAATCATAAATCGTTATTACTCCCTGAAAATAGATCCGTTTGTGTTACAAAACTCCCAGAGGACTGCCACTATGAGCCAGAGAATCTTGTCAAGTTATTTCTTTTGCCTAATGTAAAGTGTCTTGGGAGGAGGACGAGAAAGTTCTCAGATGAATCAACAGAGCAATGGAATAACAATGAACCATTCAATTCATGGGATAATGGAAGTGTTTGTGACGGTGAGTATGATGGTGCACATAGTGACATAGATGACTCAAGCACACTTATTTCTCAGCCTCGTCAGATTAACAAAATTGAAGTTCAATATGACAAAACGTCCAAACAAGTTGATGTTCAGACACTGAAATTTACTATTTGGAACTGTATTCAAGAAATTCAAGAATCCGTTCAACTTCCTTTACAGGGTGAGAAAGAAATGGCGTCTTTCAGGCATATATTGGCCAACTTTCCTAGTGAATGCAATGCTGCTGCAACCGTCACTGACATATCTCCACATCTGTGTTTCATATGCCTATTGCATTTGGCTAATGAGAAAGAGTTGAGCATCCAAAGCTGCCCCAACTTGGATGATCTTCACATATATATGCCTACCTGA 1983 0.412 MAEFVSPNPTTVHKKKLPIPATNFFVGSNDDQLERAAARAARAAAIRRTSRAVNFNPQPSDSDPVLNKQQILELFRNCIKLASENKINQKNTWDLDLIDHLTDIIRADDDNNDAETNFQMASCTLEAGVKIYSLRVDSVYSEAYKVLARMNRAGHEMEQDTTLESVNAEGGQEDSKKGIIKKLSPVSTLESSFEVLNVKKFDVAFAVDPLYRQTSAKFDEGGANGLLMNNLGVYGRCRVLFDSLDVPGTYVASQNEHAISDVIDLSFARDCVEQMVLDMGIKDAISPTLRVIVNQFDENNRRPSNFQFHGQNSAEEFDAAIDCEVGAESEEDHENFPSWPYEHDNQRFVAELGSNDIDPNFSSYPQEKEPFPSQDPEMDEIFGNADEYLFASLGFRSKKNAWAGPDHWQYRKAKGPVSEVHCSSEDGSTLKTRRPRTMRQIEVDLNFTNFLGKTLPDIFAPPKNHKSLLLPENRSVCVTKLPEDCHYEPENLVKLFLLPNVKCLGRRTRKFSDESTEQWNNNEPFNSWDNGSVCDGEYDGAHSDIDDSSTLISQPRQINKIEVQYDKTSKQVDVQTLKFTIWNCIQEIQESVQLPLQGEKEMASFRHILANFPSECNAAATVTDISPHLCFICLLHLANEKELSIQSCPNLDDLHIYMPT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03887 660 Pfam Condensin complex subunit 2 26 544 IPR022816 GO:0000796|GO:0007076
Trre11g03887 660 Pfam Condensin complex subunit 2 545 656 IPR022816 GO:0000796|GO:0007076
Trre11g03887 660 PANTHER CONDENSIN COMPLEX SUBUNIT 2 21 658 IPR022816 GO:0000796|GO:0007076
Trre11g03887 660 PIRSF Condensin_H 5 270 IPR022816 GO:0000796|GO:0007076
Trre11g03887 660 PIRSF Condensin_H 260 547 IPR022816 GO:0000796|GO:0007076
Trre11g03887 660 PIRSF Condensin_H 537 659 IPR022816 GO:0000796|GO:0007076
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03887 Trre-Chr11 52121816 52126165 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03887 K06676 - gmx:100777082 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03887 11 52121816 52126165 Trre11g03887 11 52121816 52126165 ECH
Trre11g03887 11 52121816 52126165 Trre7g01350 7 9836493 9840852 PCT