Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03836 ATGACAAAAAATTGTGACTACCACGAAGACGAACACCGCCAACTCATCCGGCGCATATTTGCCGGAATCCTTAGCTTCATAATCCTCATACTCCTTGTAATCTTCTTAATTTGGATCATCCTCCGACCAACCAAACCACGGTTCATCCTCCAAGATGCAACCGTTTTCGCCTTCAACCTCTCCTCCACCGGCGAAACACCTTCTTCCATCGTGCCTACACCAAACACCCTAACCCTCACAATTCAAGTCACTCTTTCATCCTTCAATCCTAACTCGAAAATCGGCATTTACTATCACAAACTTGACGCATACGCTTCCTATAGAGGACAACAAATCTCTTTAGCCACTGAACTTCCACAAACTTATCAAGGTCACCGCGATGTCGCAGTTTGGTCTCCAATACTCTACGGTGCAGCTGTTCCGGTTTCTCCTTACTTGTCGGGGATTCTCCGACAAGATCAAACTTCAGGTGGAGTGTTGGTCAACATTAAAGTCAACGGCAGAGTTAAGTGGAAAGTTGGGACTTGGGTTTCTGGAAGGTACCATATTGATGTCAATTGTCCGGCGTTTATCAGGGTCACCGGAGATAAGGGTGACGACGGTTTTGGAGTTTCCCGTCCGGCCGTGAAGTTTCAGTTTTTGCAAACTTGTGTTGTTGATGTTTAA 666 0.4595 MTKNCDYHEDEHRQLIRRIFAGILSFIILILLVIFLIWIILRPTKPRFILQDATVFAFNLSSTGETPSSIVPTPNTLTLTIQVTLSSFNPNSKIGIYYHKLDAYASYRGQQISLATELPQTYQGHRDVAVWSPILYGAAVPVSPYLSGILRQDQTSGGVLVNIKVNGRVKWKVGTWVSGRYHIDVNCPAFIRVTGDKGDDGFGVSRPAVKFQFLQTCVVDV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03836 221 PANTHER OS05G0367900 PROTEIN 17 198 IPR044839 GO:0098542
Trre11g03836 221 Pfam Late embryogenesis abundant protein 84 187 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03836 Trre-Chr11 51624536 51625201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03836 13 197 EF-hand Containing Proteins AT5G21130 25.269 1.34e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03836 - - pvu:PHAVU_005G120900g 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03836 11 51624536 51625201 Trre11g03836 11 51624536 51625201 ECH
Trre11g03836 11 51624536 51625201 Trre7g01397 7 10296609 10297262 PCT