Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03800 ATGACACAAGTTCTCCACTCTCCACCTCATTTTACTTCTTCATCACCAACAACACCTTCAACTTCTTCATCTTCTTCTCCTCTTTCTTCATTCTCTTGCCATGCCATTTTTCAACCTCCTTCACAAACTCATTTTCCACTTTTTGAACTTTTAGTTACCCTTTTTAGAAAATCATTATTTCCTTTCAAAAATAGTGCCAACAAGGATATTTGCAATATGGACATTAGCTCTCCGACTAACGTGCGCCATGTTGCGCACGTTACTTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGATGAGTTTGAACCTGATTTTCCTCGAAGGCCTCCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAATTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTGTTGTTAATGCAAAGGCATCTTTATGTTCAAGGAGGGTTGCAGGTGGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGAATCAATTGAACTTAGGATTGGTTCCTGAAGACATTGATGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAACTTCCGACTGCCGTTCTGGATTCATTATCACAAGATCAGGTAATGCAATGCCAAACTGAGGAAGACAGTATTGTACTAGTGAGGCATCTACCTCATACTGAAGCCGCGCTCTTGGACTGGGCCATCAATCTAATGGCCGATGTAGTCCAATACGAACATCTTAATAAGATGAACGCACGCAACATTGCCATGGTTTTCGCACCAAACATGACTCGGATGGCCGATCCATTAACTGCATTGATGTACGCAGTTCAAGTGATGAACTTTTTGAAGACACTTATATTAAGGACACTACGAGAAAGAAAGGATTCGGTGGTTGAATCGAATCCTAGATTGAATTTAGAACCTTCTGATGAGAATGGACGCCGTAGACTTTTTGAGTCGTGTCAGAAAGAAGATACTGCAGCAGCAGTAGAAGACAATGAAGAGGCTCAGGAAAATTTTGTCTCAGAAAAATCTGTCTTAGAATGTTCATCTGAATCGCTCGAAAAAAATTCCTCAACTCGAGAAGAATCTGGCAGTTTGATAAGCACTTCTGAGAATCAAATTGCCAATGAGGATTTGTATTGTGAGTTTCCACCGAAAAGAAACATGGGGAAGAACAATAAGTCTAGTCAAACAAGTAGTTCAAATGCTAGGAAAGGGTCTAAAAAGACAAGAAGCCAACAACCTGCAATCAACGGAAAAACATCGGTCGAGAAAAAGGGAATGAGGACTTTAAGTAACACAGATACAAGATCCGATCGAGTCGAAGCTTGGAGGTGA 1362 0.4046 MTQVLHSPPHFTSSSPTTPSTSSSSSPLSSFSCHAIFQPPSQTHFPLFELLVTLFRKSLFPFKNSANKDICNMDISSPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQGGLQVEGIFRINADNSQEEHVRNQLNLGLVPEDIDVHCLAGLIKAWFRELPTAVLDSLSQDQVMQCQTEEDSIVLVRHLPHTEAALLDWAINLMADVVQYEHLNKMNARNIAMVFAPNMTRMADPLTALMYAVQVMNFLKTLILRTLRERKDSVVESNPRLNLEPSDENGRRRLFESCQKEDTAAAVEDNEEAQENFVSEKSVLECSSESLEKNSSTREESGSLISTSENQIANEDLYCEFPPKRNMGKNNKSSQTSSSNARKGSKKTRSQQPAINGKTSVEKKGMRTLSNTDTRSDRVEAWR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03800 453 Pfam P21-Rho-binding domain 74 107 IPR000095 -
Trre11g03800 453 SUPERFAMILY GTPase activation domain, GAP 115 294 IPR008936 -
Trre11g03800 453 MobiDBLite consensus disorder prediction 340 453 - -
Trre11g03800 453 Pfam RhoGAP domain 137 271 IPR000198 GO:0007165
Trre11g03800 453 Gene3D Rho GTPase activation protein 105 311 IPR008936 -
Trre11g03800 453 SMART PBD_5 75 109 IPR000095 -
Trre11g03800 453 MobiDBLite consensus disorder prediction 438 453 - -
Trre11g03800 453 PANTHER MKIAA1688 PROTEIN 22 421 IPR044785 GO:0005096
Trre11g03800 453 MobiDBLite consensus disorder prediction 350 384 - -
Trre11g03800 453 CDD RhoGAP 137 293 - -
Trre11g03800 453 ProSiteProfiles Rho GTPase-activating proteins domain profile. 120 305 IPR000198 GO:0007165
Trre11g03800 453 Gene3D CRIB domain 71 104 IPR036936 -
Trre11g03800 453 MobiDBLite consensus disorder prediction 1 23 - -
Trre11g03800 453 ProSiteProfiles CRIB domain profile. 75 88 IPR000095 -
Trre11g03800 453 MobiDBLite consensus disorder prediction 397 437 - -
Trre11g03800 453 FunFam Rho GTPase-activating protein 5 105 298 - -
Trre11g03800 453 SMART RhoGAP_3 134 297 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03800 Trre-Chr11 51328408 51331151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03800 - K20642 gmx:100784019 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03800 11 51328408 51331151 Trre7g01426 7 10501674 10504154 PCT