Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03690 ATGCGAACAGTGGCGGTTATCTTTATATTCATTACCGCGTTTTTAACGACGGCGGTGGCGGTTATTTCTGGATCGCCGGCGACACTTACGTTAGAAAGAGCTTTTCCATCGAATCACGGAATTGAGTTGAATCAGCTTAAAGCTAGAGACTTATTAAGAAATCGGAGAATTTTACAATCTTCAAACGGTGTTGTTGATTTCGATGTTCATGGTACCTTTGATCCCTTCCAAGTTGGGCTATATTTTACAAAGGTGCAATTGGGTACTCCTCCGGTTGAATTTTACGTGCAGATTGACACTGGCAGTGATGTTCTTTGGGTCAGTTGTAGCTCCTGCAGTGGATGTCCACAGACGAGTGGACTGCAGATTGAGCTCAATTTTTTTGATCCCGGGCATTCATCAACATCATCGTTAATCTCTTGTTCTGACCGAAGGTGCAACAGTGGAATTCAATCATCAGATGCAACATGTTCTAGTCAGAACAATCAGTGCTCTTACACTTTCCAGTATGGTGATGGTAGTGGAACATCAGGCTATTACGTGTCAGATACGATGCATTTGGATACTATTTTCGAAGGATCTGTGACTACAAATTCTTCAGCTCCAGTAGTTTTCGGTTGTAGTAACCAACAAAGTGGAGATTTGACAAAATCTGACAGAGCAGTTGATGGTATATTTGGATTTGGTCAACAGGAAATGTCTGTGATCTCTCAGCTTTCCTCACAAGGGATTGCTCCTAGAGTATTCTCACATTGTCTTAGAGGAGATAGCACTGGTGGAGGAGTATTGGTTCTTGGTGAAATTGTGGATCCTAACATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAACTTAAATCTACAGAGCATCTCTGTCAACGGCCAGACATTGCAAATTGACGCATCAGTTTTTGCAACATCAAACAACAGAGGTACCATCGTTGATTCTGGAACAACTCTGGCATATCTTGCAGAAGAAGCTTATGATCCCTTTGTTAATGCAATTACAGCTACGATACCTCAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTTCTTAATTACTAATAGTGTCACTGACATTTTCCCTCAAGTGAGTCTGAACTTTAAGGGTGGTGCATCACTGGATTTAAGACCGCAAGATTACCTTATACAGCAAAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGCTTCCAGAAAATCCAAGGTCAAGGGGTGACAATTCTTGGAGATCTCGTATTAAAAGACAAGATTGTTGTTTATGATCTGGCCGGTCAACGTATTGGATGGGCCAACTATGACTGTTCTTTGTCGGTTAATGTCTCCGCAGCAACTGGCACTGGCAGAAGTGAATTTGTGAATGCTGGTGAGATAAGTGGAAGCAGTTCCTTACATGATGGACTTAAGTTGTCAAAGACAGGGTTTTGGGCTTTCTTTATAAACTTGATTTGCTGCTTTGTGTTTTTATAG 1485 0.4168 MRTVAVIFIFITAFLTTAVAVISGSPATLTLERAFPSNHGIELNQLKARDLLRNRRILQSSNGVVDFDVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCSGCPQTSGLQIELNFFDPGHSSTSSLISCSDRRCNSGIQSSDATCSSQNNQCSYTFQYGDGSGTSGYYVSDTMHLDTIFEGSVTTNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLRGDSTGGGVLVLGEIVDPNIVYTPLVPSQPHYNLNLQSISVNGQTLQIDASVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCFLITNSVTDIFPQVSLNFKGGASLDLRPQDYLIQQNSIGGAAVWCIGFQKIQGQGVTILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSAATGTGRSEFVNAGEISGSSSLHDGLKLSKTGFWAFFINLICCFVFL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03690 494 Gene3D Acid Proteases 62 267 IPR021109 -
Trre11g03690 494 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Trre11g03690 494 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Trre11g03690 494 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Trre11g03690 494 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Trre11g03690 494 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Trre11g03690 494 FunFam Aspartic proteinase-like protein 2 64 267 - -
Trre11g03690 494 SUPERFAMILY Acid proteases 76 443 IPR021109 -
Trre11g03690 494 CDD pepsin_A_like_plant 81 440 IPR034161 -
Trre11g03690 494 Gene3D Acid Proteases 268 446 IPR021109 -
Trre11g03690 494 PANTHER ASPARTYL PROTEASES 23 434 IPR001461 GO:0004190|GO:0006508
Trre11g03690 494 FunFam Aspartic proteinase-like protein 2 268 447 - -
Trre11g03690 494 Pfam Xylanase inhibitor C-terminal 284 436 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03690 Trre-Chr11 50132577 50136893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03690 55 441 Miscellaneous Gene Families AT1G44130 27.861 8.67e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03690 - - gmx:100791299 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03690 11 50132577 50136893 Trre11g03690 11 50132577 50136893 ECH
Trre11g03690 11 50132577 50136893 Trre7g01506 7 11286061 11290255 PCT