Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03552 ATGGCAGCCACATTCTCCCCCATTTCCGATGATCTCTATTCACCGATCTTAGCACCACCGTCAAAAAATACAACGGAAACCGAAAAGATATGTATTGATGATATGCTTGAGATATACTGTGGCGAATTCGGAAAGTGGCAGTTGAAACATTTTATCCTCACATGTCTTGCATGGGCTCTTGAAGCTTTTCATACTATGGTTATGATTTTTGCTGATCGGGAACCTCATTGGAGGTGTGTTAATGGTGCGGAATGCGGTGGTCGGAGTATGTGTGGGATGAAGGCGGGGGAGTGGGAGTGGATTGGAGGGAAATCGGCCTCGACGGTTTCTGAATGGAATTTGATTTGTGGTGATAAGTTTAAAGTTGGACTTGTTCAAGCTGTTTTCTTTGCTGGGTGCATGATTGGAGCAGGAGTGTTTGGTCATCTTTCAGACTCATTTTTAGGAAGAAAAGGTTCTCTCAAGGTAGTTTGTGCCTTAAACGCCATATTTGGCTGCTTAACAGCATTCTCCCCAAACTATTGGACATACGTCCTCCTTCGCCTCCTCACCGGTTTCAGCAGTGGCGGTGTTGGTCTTTGCGCCTTTGTCCTTGCCACCGAACCCATTGGCCCATCAAAACGAGGTACAGCCGGAATGTCCACTTTCTACTTCTTCTCTGGTGGCATTGCAATTCTCTCAGGTATCGCCTATATCTTCCAAACATGGCGCACACTCTACATCGTAGTCTCCATCCCATCCCTTCTATACATAATCCTCATCCTTCCCTTCGTGTCTGAGTCCCCAAGATGGTACATCGTTCGAGGAAGAATACATGAAGCGACAATGCTCATGTCCACCATTGCTTCGTCCAATGGAAAATACCTTCCGGATGGTGTTTTCCTTGCGTTAGATGAAGAAGTATCAAAATCAAAAATAGCAACAAATGATGACGAATATAACCTAATTAGTTGCATAGAAAACAAGGATGCACAGGTTGGATCCCTTGTCGATGTGATTCGCTACCCAGTTACACGTAGTAGGTTATTACTAGCGGTAGCTATTAACTTTTTAACCTCATTAGTGTATTATGGTCTTAGCTTAAACGTAGCCAACCTCGAAACCAACCTCTACATGAATGTCTTTTTGAATGCAGTTGCAGAAATGCCGGCATTCACTATAACAGCGATGTTATTGGATAGGTTTGGGAGGAAACCATTGACAATAGGGACAATGTGGTTTAGTGGATTCTTTTGTTTGATGGGAAGTTTGATGAGCAATATTGGGGTGTGGAAAGTAATTAAAATGGTGTGTGGTGTGTTAGGGATATTTGGAATGGCGGGAACTTATAACTTGTTGTATATTTATACGACAGAGTTATTTCCTACGGTGGTGCGGAATGTGGCGTTAGGGTGTACGATTCAGGCAGCGCGATTGGGGGGGATATTGGCACCTTTTGTAGTTGTTTTGGGTGGTTGGTTGCCATTTGGAGTGTTTGCGGCATGTGGAATTTTAGGTGGAATGTTTCCGTTTTATCTGCCGGAGACACTAAATATGCCTCTTTATGATACATTTAATGGATTGGAGGCTGGACTTGGATGA 1581 0.4377 MAATFSPISDDLYSPILAPPSKNTTETEKICIDDMLEIYCGEFGKWQLKHFILTCLAWALEAFHTMVMIFADREPHWRCVNGAECGGRSMCGMKAGEWEWIGGKSASTVSEWNLICGDKFKVGLVQAVFFAGCMIGAGVFGHLSDSFLGRKGSLKVVCALNAIFGCLTAFSPNYWTYVLLRLLTGFSSGGVGLCAFVLATEPIGPSKRGTAGMSTFYFFSGGIAILSGIAYIFQTWRTLYIVVSIPSLLYIILILPFVSESPRWYIVRGRIHEATMLMSTIASSNGKYLPDGVFLALDEEVSKSKIATNDDEYNLISCIENKDAQVGSLVDVIRYPVTRSRLLLAVAINFLTSLVYYGLSLNVANLETNLYMNVFLNAVAEMPAFTITAMLLDRFGRKPLTIGTMWFSGFFCLMGSLMSNIGVWKVIKMVCGVLGIFGMAGTYNLLYIYTTELFPTVVRNVALGCTIQAARLGGILAPFVVVLGGWLPFGVFAACGILGGMFPFYLPETLNMPLYDTFNGLEAGLG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03552 526 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 511 IPR020846 GO:0022857
Trre11g03552 526 Pfam Sugar (and other) transporter 119 515 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre11g03552 526 ProSitePatterns Sugar transport proteins signature 2. 183 208 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre11g03552 526 ProSitePatterns Sugar transport proteins signature 1. 388 404 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre11g03552 526 Gene3D MFS general substrate transporter like domains 50 518 IPR036259 -
Trre11g03552 526 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 43 516 - -
Trre11g03552 526 SUPERFAMILY MFS general substrate transporter 118 514 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03552 Trre-Chr11 48588601 48594144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03552 10 522 Organic Solute Cotransporters AT3G20660 66.860 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03552 K08202 - gmx:100797665 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03552 11 48588601 48594144 Trre11g03552 11 48588601 48594144 ECH
Trre11g03552 11 48588601 48594144 Trre7g02198 7 17525011 17528058 PCT