Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01539 ATGTCTAAACCTTTGAGTGATCATCCTCTTCTGCAAGCGGAAACAACATGTGGCTCACTTCTTCAAGAACTTCAGATAATTTGGCATGAAGTTGGGGAGTCTGAGTCTGAAAAAGATAGAATGTTGTTCGAGATTGAACAAGAATGTCTAGAAGTATACAGAAGAAAGATAGATAAAGCTAATTGCTCTAGAGCTCAAATAAGGCAGGAAATTGCTGATTCCGAGGCAGAACTTACAGCTATCTGTTCAGCAATGGGAGAGCGCCCAGTACATAGTAGACAGTCTGGTCAAAAGGCTAGAAGCTTGAAGGAAGAGCTAGAAATGATTGTCCCGGAGCTGGCGGAAATGCAAAAACGAAAGCATGATCGTAGGAATCAATTCATAGAAGTTCAAGAGCAGATTCAGAGTATCTCAAATGAGATCCATGGTGCAAGAGAAATTATTCCGTTCATTGTAGATGATACTGATTTATCATTGAGGAAACTTGAAGAATTGCACAGGCAACTTCACACACTTCAAAAGGAGAAGAGTGATCGTCTCAAGAAGCTCCAAGATAACCTGTACAGTTTAAGTTCTCTCTGTTCAGTACTTGGATTGGACTTTAAGCAGATAGTCAGTGAAGTCCATCCTAGTTTAGGAAACTCAGAAGGATCTAAGAGTGTAAATAATGATACCATCAGCCAATTGGCTTTATCTATACAAGAATTGCGAGGAGTGAAATTGCAGAGAATGCAAAAGCTTCAAGATCTAGCAACGTCATTGTTGGAGCTCTGGCATTTGATGGATACACCTATTGAAGAGCAACAGGTATTTCAGAATGTTACTTGTAACATTGCAGCTTCAGAAGATGAAGTAACTGAACCAAACGCCTTGTCTGAGGACTTCATTAATAATGTGGAGGTAGAAGTGTCTAGATTAGAGGACTTAAAATCAAGCAAAATGAAAGAACTTGTTTTCAAGAAAAGATCAGAGCTAGAGGAGATTTGTAGGAAGACTCATTTGATTCCAGAATTTGATGGTGCGGTCGAATATACTATTGAAGCTATAGAGGCTGGATCTGTAGACCCTGCTTCTGTACTTGAACAAATTGAACTTCAGATTTCCCAAGTCAAAGAGCAAGCTTTTAGTAGAATAGAAATACTTGAAAAGGTTGATAAATGGTTGTCAGCATGTGATGAAGAGTCTTGGCTTGAGGAGTACAGCAGGGATGAAAATCGATACAATGCTGGTAGAGGTACTCATCTTAATCTCAAACGAGCTGAGAAAGCCCGTGTCCTGGTGAATAAAATTCCAGCAATGACAGACAACTTGACTTCAAAAACAGTAGCATGGGAAAAGGATAAAGGCACCGAGTTCATATATGATAGTGTCCGCTTGCTTTCTATGCTTGAAGACTACAGCTTATTACGGCAAGAGAAGGAGCAAGAACGCCGAAGACAGCGGGACATGAAGAAACTTCAGGGACAACTGGTAGCAGAGCAGGAAGTATTGTATGGGTCAAAAAGCCCTTCAAAGCCCCAGAGTGCAAGAAAGGCACCTAGGACGCCGAGTGGAAGTGCAGGTAGTAGAAGAGGTACCTTTGGAGGGTCAATGCTAAAACCTGATTCAAAGCTTACTCGCTCAAGCTCCACAAGGAAGACTGACAGAGTGTACCAAATTGAGGACGATGGAATTTCATGTTTATCATCAGCTAGAAGAGGAGTTGATAATATTGCTGATATTTCTATGCGAAGATACTCATTGGGTGCTGGAGTTGTTCGGGATATCAAATCTCCTTTGACACGACAACCGTTTTCGATCATCTCTTCAACAATATCATCACAAGAGAATGTGGAAAATGCGGCAGCTGAATCGAATTTGCAGAAGCAGAAGTTGCAGAAAACATTCGCAATTAACAATTTTCCATTCACTACTACTACTACTACTACCTCAAAGGCGGAGACAGTGGTAGATGAAGAGAATAAGAATAGAACTCCAAAACCAATGCCTGTTCCTGCCTCCACTACTACACCAAGGACAGTGTCAATACCTATGAATATGACCATGACTCCAGCTCCTTTTGGAAGTAATCAGGTTCAAGAAATTGAATATTCCTTTGAGGAAAGAAGGTTTGGTTTTGTATTAATATGA 2130 0.4061 MSKPLSDHPLLQAETTCGSLLQELQIIWHEVGESESEKDRMLFEIEQECLEVYRRKIDKANCSRAQIRQEIADSEAELTAICSAMGERPVHSRQSGQKARSLKEELEMIVPELAEMQKRKHDRRNQFIEVQEQIQSISNEIHGAREIIPFIVDDTDLSLRKLEELHRQLHTLQKEKSDRLKKLQDNLYSLSSLCSVLGLDFKQIVSEVHPSLGNSEGSKSVNNDTISQLALSIQELRGVKLQRMQKLQDLATSLLELWHLMDTPIEEQQVFQNVTCNIAASEDEVTEPNALSEDFINNVEVEVSRLEDLKSSKMKELVFKKRSELEEICRKTHLIPEFDGAVEYTIEAIEAGSVDPASVLEQIELQISQVKEQAFSRIEILEKVDKWLSACDEESWLEEYSRDENRYNAGRGTHLNLKRAEKARVLVNKIPAMTDNLTSKTVAWEKDKGTEFIYDSVRLLSMLEDYSLLRQEKEQERRRQRDMKKLQGQLVAEQEVLYGSKSPSKPQSARKAPRTPSGSAGSRRGTFGGSMLKPDSKLTRSSSTRKTDRVYQIEDDGISCLSSARRGVDNIADISMRRYSLGAGVVRDIKSPLTRQPFSIISSTISSQENVENAAAESNLQKQKLQKTFAINNFPFTTTTTTTSKAETVVDEENKNRTPKPMPVPASTTTPRTVSIPMNMTMTPAPFGSNQVQEIEYSFEERRFGFVLI 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01539 709 Coils Coil 162 182 - -
Trre11g01539 709 Coils Coil 608 628 - -
Trre11g01539 709 Pfam Microtubule associated protein (MAP65/ASE1 family) 19 517 - -
Trre11g01539 709 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 12 548 IPR007145 GO:0000226|GO:0008017
Trre11g01539 709 Gene3D - 367 500 - -
Trre11g01539 709 MobiDBLite consensus disorder prediction 500 524 - -
Trre11g01539 709 Coils Coil 50 77 - -
Trre11g01539 709 Coils Coil 296 316 - -
Trre11g01539 709 MobiDBLite consensus disorder prediction 661 679 - -
Trre11g01539 709 Coils Coil 463 489 - -
Trre11g01539 709 FunFam 65-kDa microtubule-associated protein 6 367 500 - -
Trre11g01539 709 MobiDBLite consensus disorder prediction 644 679 - -
Trre11g01539 709 MobiDBLite consensus disorder prediction 494 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01539 Trre-Chr11 14996148 15000935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01539 12 518 EF-hand Containing Proteins AT5G62250 56.757 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01539 K16732 - gmx:100777734 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01539 11 14996148 15000935 Trre1g03465 1 31184590 31189085 ECH
Trre11g01539 11 14996148 15000935 Trre11g01539 11 14996148 15000935 ECH
Trre11g01539 11 14996148 15000935 Trre1g03465 1 31184590 31189085 PCT