Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01227 ATGAAGAATGTAGTGTTGAAGGTTTATGTTCATAATGATAAAATCAAGCAAAAAGTTATGAAGACAGCATCTAGCCTTTCAGGGGTTGAATCAGTATCAATAGATATGAAAGAGAAGAAATTGACATTATCAGGAGATATTGATCCAGTAAATGCAGTGTCCAAACTACGAAAGTTTTGTCATATTGAAGTAGTTTCAGTTGGACCTTCAAAACCCAAAGAGGAGAAAAAGTCTCAGGATAAGCCCTTTGAAGGTTATCCATTCTATTATCATGTGCAACAACCACAATATATTCAAGATTACTACTATATTTAA 315 0.3302 MKNVVLKVYVHNDKIKQKVMKTASSLSGVESVSIDMKEKKLTLSGDIDPVNAVSKLRKFCHIEVVSVGPSKPKEEKKSQDKPFEGYPFYYHVQQPQYIQDYYYI 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01227 104 Pfam Heavy-metal-associated domain 10 57 IPR006121 GO:0046872
Trre11g01227 104 SUPERFAMILY HMA, heavy metal-associated domain 3 58 IPR036163 GO:0046872
Trre11g01227 104 Gene3D - 1 72 - -
Trre11g01227 104 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 3 79 - -
Trre11g01227 104 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01227 Trre-Chr11 11801527 11802273 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01227 - - gmx:100783411 123.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01227 11 11801527 11802273 Trre1g05341 1 59252711 59253532 PCT