Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00891 ATGTACGTTGTTCCTCCTCCTCAGAGATCCGATCCGGGTTCAGGATCTGCTGATTTGCGTGTTTATCAAGCTTGGAAGGGTTCTAATAAATTTTTTCTTCAAGGACGGTTCATATTTGGACCAGATGCAAGATCGTTGGGCCTGACAATTTTTCTTATTGTTGCTCCGGTTGTAGTGTTCTGCATCTATGTTGCCAGAAAGTTTTTCGATGATTATTCTGATCACTGGGGGGTATCCATAATGGCAGTTGCCATTGCCTTCACAATTTATGTCTTAGTTCTTCTCTTCTCAACATCTGGTCGTGACCCTGGCATAATCCCACGCAATGCACATCCTCCAGAGCCAGAAAGTCTTGAAGGAAGTGTAGATGTTGGGGCTGGTCAAACTCCTCAATTGCGGTTGCCTCGTATCAGGGAGGTTGAAGTCAATGGAATTGCTGTTAAAGTTAAGTATTGTGATACTTGCATGCTCTACAGGCCTCCTCGATGCTCTCACTGCTCAATTTGCAACAACTGCGTAGAGAGGTTTGATCATCACTGCCCCTGGGTTGGACAGTGCATTGGGCTGCGTAACTATCGCTTCTTCTTCATGTTTGTCTTCTCAGCTACGCTGCTTTGTATATATGTTTTCGCATTTTGTTGGGTCTATATTAGAAGAATTATGAAGGCCGAGGAGACAACAATTTGGAAGGCAATGATCAAAAGTCCAGCCTCCATAGTCTTAATCATTTACACCTTCATCTGCATGTGGTTCGTTGGCGGACTTACTGCCTTTCATTTATATCTCATAAGTACAAATCAGACTACATATGAGAACTTCAGATACCGATATGATCGACGTGCCAACCCTTATAACAAAGGAGTGTTCGATAATTTCAAAGAGATATTCTTCACCAGCATTCCCTCGTCAAAGAATAATTTCAGGGCAAAGGTACCAGCTGAACCAGTATTACCAGCTCGATCGGTGGGTGGAGGCTTTATGAGTCCAAGTATGGGAAAAGCTGTTGACGACATAGAGATGGGAAGGAAAACAGTCTGGAGTGAAATGGGCAGCAGCATCGATCAATGTGAAGGTCAGCTACACAATCGTACGGCTGTAAAAGATGGGGAGTTTGATGATTTGTCACCAGAAATTAGAACAACGGTAGATGAGACGAGCGAGCGTGTTGGAGTACATCCTAGAAGATCTAGCTGGGGAAGAAAAAGTGGAAGCTGGGAGATGTCACCGGAAGTTCTTGCTTTGGCAGCAAGGGTTGGAGAACCGAATCGTGTCGGTGGAAGTAGCAGCAGTTTGAGCACTGAGAACAGACATTCATAG 1317 0.4442 MYVVPPPQRSDPGSGSADLRVYQAWKGSNKFFLQGRFIFGPDARSLGLTIFLIVAPVVVFCIYVARKFFDDYSDHWGVSIMAVAIAFTIYVLVLLFSTSGRDPGIIPRNAHPPEPESLEGSVDVGAGQTPQLRLPRIREVEVNGIAVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSATLLCIYVFAFCWVYIRRIMKAEETTIWKAMIKSPASIVLIIYTFICMWFVGGLTAFHLYLISTNQTTYENFRYRYDRRANPYNKGVFDNFKEIFFTSIPSSKNNFRAKVPAEPVLPARSVGGGFMSPSMGKAVDDIEMGRKTVWSEMGSSIDQCEGQLHNRTAVKDGEFDDLSPEIRTTVDETSERVGVHPRRSSWGRKSGSWEMSPEVLALAARVGEPNRVGGSSSSLSTENRHS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00891 438 ProSiteProfiles DHHC domain profile. 150 200 - -
Trre11g00891 438 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 50 310 - -
Trre11g00891 438 MobiDBLite consensus disorder prediction 423 438 - -
Trre11g00891 438 MobiDBLite consensus disorder prediction 416 438 - -
Trre11g00891 438 MobiDBLite consensus disorder prediction 383 404 - -
Trre11g00891 438 Pfam DHHC palmitoyltransferase 150 274 IPR001594 GO:0016409
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00891 Trre-Chr11 7483650 7487483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00891 80 313 Lipid Metabolism Gene Families AT4G22750 26.984 5.76e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00891 - - gmx:100799812 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03016 13 31018806 31020887 Trre11g00891 11 7483650 7487483 PCT