Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4872 ATGAAGTTCCTCAGAACAATCTTCATCCACCATATCCACAAACGCCACCATTTCCTCAACCCCAAATGCGTCTTTTCATCTTTAGCTTCATCCTCACCACCGGAGGATACAGAAACCCTACATTCCACCAATCCTAGAAACGAATCCACCAATAGTTGGAGTATCTACGGTAATGTAGTTGTGAATCCGAGAATCAACGATCACAGTGACGAAAAAATCGAGGAGGAAAAACCAAGTGAGAGTGAAAATGGGAGCATGATGAATTTGAAGAACAGAAGTGTAATTAGGCCGGTGACGCCGCCGACAAAGAGGAGTACTGGGAAGGTGAAAACTCAGTGGGTTTGTAGCAGTTGTGGGTATACTGCTGGACAATGGTGGGGTACTTGTCCTTCTTGTACTATGGTTGGAACAATGAAGGAGTTTCATGAAGCAAAAATAAATGATGTTGATAATAATAAGGTTAGAAGTGGTATATCAGTTTCTGAAGATGCAATGGGAGCTTGGCTACCACAGAGAGGTGATCATTTGCGCCCTGTTAAGTTGAGTGAGGTTAACCGTGGATTCAACGAGAAGGGTTGGCGATTTCCTTTGTCTGGCCCTTTTGGAGATGAAGTTTCTATTGTGCTTGGTGGTGGTCTTGTACCAGGCTCTTTGAATTTATTTAGTGGCGATCCTGGTGTTGGGAAGAGTACACTGTTGTTGCAGATGGCAGCGTTGGTAGCAGATGGATGCAATGGCAATGACGGTGAGGCCCTTCCAGTTGTATACGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGCTCACAGAGCAGATCGCCTTGGGATTAAATCTGATATTTATTTGTATTCGAGTACTGATATTGAGGACATATTAAGGATAGCTCAGTCTCTCCCCATTCGAGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAACAGGAAGTGCTGGAGGAGTTACGCAGGTGAAAGAATGTACTTCGGCTTTGATGCGATTTGCTAAAACGACTAACATCCCAGTACTTTTGATTGGGCATGTGACAAAATCTGGAGACATAGCTGGGCCTCGTGTTCTGGAGCATATTGTGGATGTTGTCTTGTACTTAGAAGGCGAGAGGTTCACTTCATATCGAATGCTTCGTGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCAGAATCAGGATTTAAGGCTGTTTCGAATGCCACTGAAATGTTTCTCACCGAACAAGACCCTGATTCAGATGTTTTAGTTGGCTTAGCTTTTACTGTAATAATGGATGGTTCAAGAACTTTCATAATTGAAGTTCAGGCACTCTGCCTTTCAGAATCCACAGGTTCAAGAGTAACTAATGGAATTGAAGCAAATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTAATATCCCAGTAAATTCTGTACATTTGAATGTTGTTAGTGGATTGACATTGTCTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTATCCTATTCCAAAGGGCATTGCATTCATTGGTGAAATTGGCCTTAGCGGAGAGCTTCGCACGGTTCCTAGAATCGACAAAAGAGTTCACGCATTGTCAAAGTTGGGTTACAAAACCTGTGTAGTGCCGAAGCAAGCTGTAAAAGCTTTAGGAACTGAAGGTCTGGAAAATATTGAAATAGTAGGTTGCAAGAATCTGAAGGAGTTTATTAACGTAGTATTCAGTAGATAA 1779 0.4221 MKFLRTIFIHHIHKRHHFLNPKCVFSSLASSSPPEDTETLHSTNPRNESTNSWSIYGNVVVNPRINDHSDEKIEEEKPSESENGSMMNLKNRSVIRPVTPPTKRSTGKVKTQWVCSSCGYTAGQWWGTCPSCTMVGTMKEFHEAKINDVDNNKVRSGISVSEDAMGAWLPQRGDHLRPVKLSEVNRGFNEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLFSGDPGVGKSTLLLQMAALVADGCNGNDGEALPVVYVSGEESLQQIAHRADRLGIKSDIYLYSSTDIEDILRIAQSLPIRALVVDSIQTVYLKGITGSAGGVTQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESGFKAVSNATEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEVQALCLSESTGSRVTNGIEANRANMIKCVLIKQAGLNIPVNSVHLNVVSGLTLSETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRTVPRIDKRVHALSKLGYKTCVVPKQAVKALGTEGLENIEIVGCKNLKEFINVVFSR* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4872 592 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 592 - -
Tpr7g4872 592 PRINTS DNA repair protein radA signature 115 139 - -
Tpr7g4872 592 PRINTS DNA repair protein radA signature 207 235 - -
Tpr7g4872 592 PRINTS DNA repair protein radA signature 305 329 - -
Tpr7g4872 592 PRINTS DNA repair protein radA signature 344 372 - -
Tpr7g4872 592 PRINTS DNA repair protein radA signature 379 405 - -
Tpr7g4872 592 PRINTS DNA repair protein radA signature 454 477 - -
Tpr7g4872 592 Pfam AAA domain 210 353 - -
Tpr7g4872 592 ProSiteProfiles RecA family profile 1. 194 349 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tpr7g4872 592 SUPERFAMILY Ribosomal protein S5 domain 2-like 386 590 IPR020568 -
Tpr7g4872 592 Gene3D - 415 592 IPR014721 -
Tpr7g4872 592 MobiDBLite consensus disorder prediction 65 90 - -
Tpr7g4872 592 Gene3D - 206 406 IPR027417 -
Tpr7g4872 592 PANTHER DNA REPAIR PROTEIN RADA 1 592 - -
Tpr7g4872 592 MobiDBLite consensus disorder prediction 65 81 - -
Tpr7g4872 592 Pfam Subunit ChlI of Mg-chelatase 475 561 - -
Tpr7g4872 592 TIGRFAM sms: DNA repair protein RadA 108 583 IPR004504 GO:0003684|GO:0005524|GO:0006281
Tpr7g4872 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 400 IPR027417 -
Tpr7g4872 592 SMART AAA_5 215 375 IPR003593 -
Tpr7g4872 592 Pfam Rubredoxin metal binding domain 113 140 IPR041166 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4872 Tpr-Chr7 56633628 56643180 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4872 K04485 - gmx:100791181 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4872 7 56633628 56643180 Tpr7g4872 7 56633628 56643180 ECH
Tpr7g4872 7 56633628 56643180 Tpr5g2479 5 46470908 46478597 PCT