Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2479 ATGCTTTCTTATACGGTTTCTCGTTTCCCTTCAACACAATCATTACTAACAAACGCAACTTTTCCCATTAACCCCAACAAGCCTCACAAGTTCAATTTCCAACAAACCGCTTCTTCTTCTAGCGACAACAACAAAGCTGAAGACTTTCTCAGAGAAAACGCTAGTAATAGAGTGAACCCAGTTGACGCTGTTAATGATGGGGTTCTATTTGGAAGAAAGAAGAAAATGGGTAAGGAAAAAGTTTCCTGGGTTTGTAGCAATTGTGGGTATACTGCTGGACAATGGTGGGGTGTGTGTAGATCATGTAATGTTTCTGGTACTATGAAAGAGTTTCATGAAGTCAAAGGTAGTGAGAGTTTTGGTAAAGTTAGTGGCTTTTCTGTTATGGAGGATGGTTTGAGGTCTTGGCTTCCTGAGAAGAGTGGTGAGTTGCATCCTATTAGATTGTCTGAGGTTAATAGGGGTGTTGATCATCTGCATTGGAGAATTCCTTTGTCCGGTCCTTTTGGAAATGAAGTTTCCAGAGTGCTTGGTGGTGGTCTTGTACCAGGCTCGTTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTTTTGTTGCAGATGGCTGCACTAATTGCCGAAGGGGACAAAGATGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGTGTGGAGCAAATTGGTAACAGAGCAGACCGGCTAACAATTGGATCGGATATTTATTTATATTCAAGTACTGATATTGAGGACATATTGAGGAAAGTTCAGCATCTCTCCCCTCGGGCTCTAGTTGTTGATTCTGTACAAACGGTTTATTTGAAAGGAATAACGGGGAGTCCTGGAGGGATTATACAGGTGAAGGAATGTACTTCAGCTTTACTGCGATTTGCAAAGACAACAAACATCCCGGTTTTATTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTGTTGTATATGGAAGGTGAGAAGTACACTTCCTATCGTATGCTTCGAGCTGTGAAAAACCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTTGCATTCAGGACTTGAGGCTGTTTCAAATGCCAGTGAAATGTTTCTTAGCGAGCAAGATGTAGATTCAGATATTTTAGCTGGACTAGCTGTAGCTGTAATAATGGACGGGTCTCGAACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTAGTTCGACAGGATCAAGGCAGTTTAACGGTATCCATGCAAATAGAGCTGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTTCGTCTCCAAGAACATGCGGTGTTTTTAAATGTTGTTAGTGGATTGACACTGACTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCTTGGAGCTTCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGTCTCGGTGGCGAGCTTCGCATGGTTACTAGAATGGAAAAAAGGGTAAACACGGTGGCGAAATTGGGTTACAGAATGTGTGTAGTACCAAAGGCAGCTGAAAAAGTTTTGGGAACTGAAGGCTTAGAAAATATCAAAGTTGTTGGTTGCAGGAATCTGAAAGATGTTATCAACACTATATTTCCCGATGTCATGAAAAGAAGCAAGTCAGAATTGTAA 1704 0.4184 MLSYTVSRFPSTQSLLTNATFPINPNKPHKFNFQQTASSSSDNNKAEDFLRENASNRVNPVDAVNDGVLFGRKKKMGKEKVSWVCSNCGYTAGQWWGVCRSCNVSGTMKEFHEVKGSESFGKVSGFSVMEDGLRSWLPEKSGELHPIRLSEVNRGVDHLHWRIPLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQMAALIAEGDKDGEASPVVYVSGEESVEQIGNRADRLTIGSDIYLYSSTDIEDILRKVQHLSPRALVVDSVQTVYLKGITGSPGGIIQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSYRMLRAVKNRFGSTDELGVFEMLHSGLEAVSNASEMFLSEQDVDSDILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQFNGIHANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVNTVAKLGYRMCVVPKAAEKVLGTEGLENIKVVGCRNLKDVINTIFPDVMKRSKSEL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2479 567 SMART AAA_5 183 341 IPR003593 -
Tpr5g2479 567 Gene3D - 172 370 IPR027417 -
Tpr5g2479 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 368 IPR027417 -
Tpr5g2479 567 Gene3D - 391 566 IPR014721 -
Tpr5g2479 567 Pfam Rubredoxin metal binding domain 83 110 IPR041166 -
Tpr5g2479 567 SUPERFAMILY Ribosomal protein S5 domain 2-like 352 556 IPR020568 -
Tpr5g2479 567 PRINTS DNA repair protein radA signature 85 109 - -
Tpr5g2479 567 PRINTS DNA repair protein radA signature 175 203 - -
Tpr5g2479 567 PRINTS DNA repair protein radA signature 271 295 - -
Tpr5g2479 567 PRINTS DNA repair protein radA signature 310 338 - -
Tpr5g2479 567 PRINTS DNA repair protein radA signature 345 371 - -
Tpr5g2479 567 PRINTS DNA repair protein radA signature 420 443 - -
Tpr5g2479 567 Pfam Subunit ChlI of Mg-chelatase 437 527 - -
Tpr5g2479 567 PANTHER DNA REPAIR-LIKE PROTEINRADA 56 556 - -
Tpr5g2479 567 TIGRFAM sms: DNA repair protein RadA 76 551 IPR004504 GO:0003684|GO:0005524|GO:0006281
Tpr5g2479 567 Pfam AAA domain 176 319 - -
Tpr5g2479 567 PANTHER DNA REPAIR PROTEIN RADA 56 556 - -
Tpr5g2479 567 ProSiteProfiles RecA family profile 1. 162 315 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2479 Tpr-Chr5 46470908 46478597 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2479 K04485 - gmx:100794165 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2479 5 46470908 46478597 Tpr5g2479 5 46470908 46478597 ECH
Tpr7g4872 7 56633628 56643180 Tpr5g2479 5 46470908 46478597 PCT