Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4811 ATGTTTTCAGGTATAGTGAATAGGGGTCATAAGGTAAAAGGGACAGTGGTGTTGATGAGAAAGAATGTGTTGGATATAAATAGTTTAACTAGTGTTGGTGGAATTATTGGTCAAGGTTTTGACATTCTTGGTTCAACACTTGATAATCTCACTGCTTTCTTAGGCCGTTCTGTTTCTCTTCAGTTGATTAGTGGAACCAAATCTGATGCAAATGGGAAAGGGAAGCTTGGAAAAGCAACTTTTTTGGAAGGTATAATCACTTCATTACCAACTTTGGGAGCTGGACAATCTGCATTCAAAATTCATTTTGAATGGGATGATGACATGGGAATTCCTGGAGCATTTTACATAAAAAACTTTATGCAAACTGAGTTTTTCCTTGTGAGTTTGACTCTTGAAGACATTCCAAATCATGGAAGCATTTACTTTGTATGCAACTCTTGGATATATAATGCTAAACACTACAAAAATGACAGAATTTTCTTTGTCAATCAGACCTATCTTCCAAGTGAAACACCGGCTCCATTAGTCCATTATAGAGAAGAAGAATTGAATAATTTAAGAGGAGATGGAACCGGAGAACGCAAAGAGTGGGATAGGATCTATGATTATGATGTCTACAATGATTTAGGAAATCCAGATCAAGGTGAAAACCATGCACGTCCGGTTCTTGGAGGATCCGACACATATCCTTACCCTCGTAGGGGCAGAACCGGCAGAAAACCAACAAGAAAAGATCCTAAGAGTGAGAGTAGGAGTGATTCTGTGTATCTTCCAAGAGATGAAGCTTTTGGTCACTTGAAGTCATCAGATTTTCTGACTTATGGACTGAAAGCGGTATCTCAAAATGTGGTTCCGGCATTAGAGTCTGTGATCTTTGATTTAAATTTCACACCAAATGAGTTTGATAGCTTTGAGGAAGTTCATGGATTGTACGAGGGCGGAATTAAGCTGCCAACTGATGTACTTAGCAAGATAAGTCCGTTACCTGTGCTCAAAGAAATCTTTCGAACTGATGGCGAACAATTCCTCAAGTATCCGCCACCTAAAGTAATTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCGAGAGAAATGCTTGCCGGAGTAAATCCAAATGTGATATCTCGTCTTGAGGAGTTTCCTCCGCGAAGCAAGCTTGATAGTAAAGTGTATGGTGATCACACCAGTAAAATAACCAAAGAACATCTTGAGCCTAATTTAGAAGGACTCACAGTAGAAGAGGCAATTCAAAACAAGAAACTATTCCTGCTAGATCATCATGACTCAATTATGCCATATCTGAGGCGAATAAACTCAACTCCCACGAAGGCTTATGCTACGAGAACCATCCTTTTCTTGAACAATAGCAACACTTTAAAGCCACTGGCCATAGAGTTGAGTTTGCCACACCCCGAAGGAGATGAACATGGTTTTGTTAGTCATGTTTATCAACCCGCGCTGGAAGGCGTAGACAGTACTATTTGGTTACTGGCCAAGGCTTATGTCATTGTGAATGATTCCTGCTATCATCAACTTGTCAGCCATTGGTTAAATACTCATGCTGTTGTTGAACCATTTGTCATAGCAACTAACAGACAGCTGAGTGATCTTCACCCCATTTATAAACTTTTGTATCCTCACTATCGTGACACCATGAATATAAATTCTCTTGCTCGACTATCACTGGTCAACGATGGAGGTATCATCGAAAAAACATTTTTATGGGGAAGATATTCTATGGAAATGTCTTCTAAAGTTTACAAGAATTGGGTTTTTCTAGAGCAAGCATTGCCTGCTGATCTTCTCAAAAGAGGAATGGCAGTTGAGGATCCAACTTCTCCACATGGCATTAAACTTGTTGTAGAGGACTATCCTTATGCTGTTGATGGATTGGAGATATGGGCTGCAATAAAAACATGGGTTCAAGACTATGTCTCCTTGTACTACACCACAGATGACACACTTCGACAAGATTCTGAACTCCAAGCTTGGTGGAAAGAACTCGTGGAGGTTGGTCACGGTGATAAGAAGCACGAGGCATGGTGGCCTAAGATGCAAACTCGTGAAGAGCTAATTCAAGTTTGCTCTATCGTCATATGGATTGCTTCAGCTCTTCATGCAGCTGTTAATTTTGGACAGTATTCTTATGGAGGTTTAATATTAAACCGTCCAACTCTTAGTCGAAGATTCATGCCTGAGAAAGGTTCGCCTGAGTACAATGAACTAGTCAAAAGTCCACAAAAGGCTTACTTGAAGACAATTACACCGAAGTTTCAGACACTTATCGACCTTTCTGTTATAGAAATATTGTCAAGGCATGCTTCTGATGAATTGTACCTTGGGGAGAGGGACAATCCAAATTGGACATCAGATACAAGGGCATTGCAGGCCTTTAAGAAGTTTGGAAATAAGTTGGCAGAAATTGAGAAGAAGCTCGCTCAAAGAAACAATGATGAGAATCTGAGAAACCGTCATGGACCGGTTCAAATGCCTTATACTTTGCTCTATCCTTCTAGTGAGGAAGGACTTACTTTTAGAGGAATTCCTAATAGTATCTCTATCTGA 2577 0.3997 MFSGIVNRGHKVKGTVVLMRKNVLDINSLTSVGGIIGQGFDILGSTLDNLTAFLGRSVSLQLISGTKSDANGKGKLGKATFLEGIITSLPTLGAGQSAFKIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIYFVCNSWIYNAKHYKNDRIFFVNQTYLPSETPAPLVHYREEELNNLRGDGTGERKEWDRIYDYDVYNDLGNPDQGENHARPVLGGSDTYPYPRRGRTGRKPTRKDPKSESRSDSVYLPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVIFDLNFTPNEFDSFEEVHGLYEGGIKLPTDVLSKISPLPVLKEIFRTDGEQFLKYPPPKVIQVSKSAWMTDEEFAREMLAGVNPNVISRLEEFPPRSKLDSKVYGDHTSKITKEHLEPNLEGLTVEEAIQNKKLFLLDHHDSIMPYLRRINSTPTKAYATRTILFLNNSNTLKPLAIELSLPHPEGDEHGFVSHVYQPALEGVDSTIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRQLSDLHPIYKLLYPHYRDTMNINSLARLSLVNDGGIIEKTFLWGRYSMEMSSKVYKNWVFLEQALPADLLKRGMAVEDPTSPHGIKLVVEDYPYAVDGLEIWAAIKTWVQDYVSLYYTTDDTLRQDSELQAWWKELVEVGHGDKKHEAWWPKMQTREELIQVCSIVIWIASALHAAVNFGQYSYGGLILNRPTLSRRFMPEKGSPEYNELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDTRALQAFKKFGNKLAEIEKKLAQRNNDENLRNRHGPVQMPYTLLYPSSEEGLTFRGIPNSISI* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4811 858 ProSiteProfiles PLAT domain profile. 38 163 IPR001024 GO:0005515
Tpr7g4811 858 CDD PLAT_LH2 10 164 IPR042057 -
Tpr7g4811 858 Pfam Lipoxygenase 176 841 IPR013819 GO:0016702|GO:0046872
Tpr7g4811 858 Gene3D - 357 491 - -
Tpr7g4811 858 MobiDBLite consensus disorder prediction 213 256 - -
Tpr7g4811 858 ProSitePatterns Lipoxygenases iron-binding region signature 2. 541 551 IPR020834 GO:0016702|GO:0046872
Tpr7g4811 858 Gene3D - 268 356 IPR027433 -
Tpr7g4811 858 PRINTS Lipoxygenase signature 496 513 IPR013819 GO:0016702|GO:0046872
Tpr7g4811 858 PRINTS Lipoxygenase signature 514 531 IPR013819 GO:0016702|GO:0046872
Tpr7g4811 858 PRINTS Lipoxygenase signature 534 554 IPR013819 GO:0016702|GO:0046872
Tpr7g4811 858 ProSitePatterns Lipoxygenases iron-binding region signature 1. 514 528 IPR020833 GO:0016702|GO:0046872
Tpr7g4811 858 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 166 858 IPR013819 GO:0016702|GO:0046872
Tpr7g4811 858 SUPERFAMILY Lipoxigenase 168 858 IPR036226 -
Tpr7g4811 858 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 167 IPR036392 GO:0005515
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 198 214 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 299 320 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 344 360 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 383 402 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 449 473 IPR001246 GO:0016491
Tpr7g4811 858 PRINTS Plant lipoxygenase signature 771 785 IPR001246 GO:0016491
Tpr7g4811 858 Gene3D - 492 857 - -
Tpr7g4811 858 SMART LH2_4 10 164 IPR001024 GO:0005515
Tpr7g4811 858 PANTHER LIPOXYGENASE 1 858 IPR000907 GO:0016702|GO:0046872
Tpr7g4811 858 Gene3D PLAT/LH2 domain 1 167 - -
Tpr7g4811 858 Gene3D - 168 267 - -
Tpr7g4811 858 Pfam PLAT/LH2 domain 64 162 IPR001024 GO:0005515
Tpr7g4811 858 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 1 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4811 Tpr-Chr7 56114871 56124830 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4811 11 858 Acyl Lipid Metabolism Gene Families AT1G55020 61.279 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4811 K15718 - gmx:547869 1509.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4811 7 56114871 56124830 Tpr5g2336 5 44840127 44845371 PCT
Tpr5g2331 5 44768585 44773154 Tpr7g4811 7 56114871 56124830 PCT