Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4709 ATGTTGTCTGAATTGGGTAGGAGGCCAGTGATTGGTGGTAACGAGGGTTCATATGGAGATGAATTTGAGAAGGAAATAGGGATGTTGCTTCGTGATCAACGACGACATGAGGTTGATGATCATGAACCTGAGCTTAATTTGTATAGGAGTGGATCAGCTCCTCCAACTGTGGATGGTTCATTGAGTGCAGTTGGAGGGTTGTTTGGTGGTGGCTCTACGGCTGCCACAGCTGCAATTTCGGAGTTTTCTGGGAATGGTTTTGGTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATATTATTACTCTAATGTGAATTTGAATCCTAGACTTCCACCTCCTTTGTTATCAAAGGAGGATTGGAGGTTTACACAGAGACTAAAAGGTGGAGCTTCTGTAGTTGGTGGAATTGGTGACAGGAGGAAAGTCAATGGAGGTGATGATAATGGTGGTAGATCAATGTTTGCCACGCCTCCGGGATTTAACAATAGGAAAAGAGAGAGTGAGGTGGTGGTTGATGAAAAAGCTAGAGGTTCTGCCGAGTGGGGTGGTGATGGACTCATCGGTTTGCCAGGACTAGGTCTTGGGAGCAAACAAAAGAGCCTTGCAGAAATTTTTCAGGATGACATGGGACGTAACACTTCTGTCACTGGCTTTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGAAAATGTTGATATTACATCTTCTGCAGAAGCAGAGCTGGCTCATTTACGCCACGATTCCTCATCCACTGATGGCTTAAGGTCCGGATCAAATGTTCAAGGGTCATCTGCATCCCAAAATATTGGCCCGCAAGCCTCATATTCTTATGCTGCTGCACTTGGGGGTTCTTCCCTGTCACGAAGCACTACTCCCGATCCACAACATATTGCTAGGGCTCCTAGTCCCTGTCCCACACCGATTGGTAGTGGGAGAGTTTCTGCTGCCGAGAAGAGAGGTATTACTAGTCCCGATACATTTAATGATGTTTCATCTGGCATCAATGGGTCTGCAGATATTATGGCTGCAATGTCCGGCATGAAATTGTCAGCAGATGATGGGTTAGATGGTGATAACCATTTCCAATCACAGGTTGAGTCAGATGTTAATAATTATCAGAGATATCTTTTCGGTATGCAAGGTGGTCAGGATCATGGCAAGCAGAATTCATATTTAAAGAAGTCTGAATCAGGACACTTGCAGAAAACTGCTCACTCGGATTCAGGTAAGAGAAGTGGAAGTGGTTCAGACATGAAAAATTCTACCTTGGATAGGCATGCTGAGATGCAAAAGTCCGCTGTCTCTCCCAATAACTCGTATTTCAAGGGATCACCTGGCTCCCCTTATGGTGGTGGAGGTGGTTTTCCTGCACAATATCAGCCTTCAGATGGTCCCAACTCACCATTTAATAACTATGGCCCGAGTGGTGGATATGGTGGAAATCCAGCGGTGGCATCCTTCATGGCTAACCAACTTGGAACTGGTAATCTGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCCATGGCATCCCCTGGAATGGACTCTAGAATCCTTGGTGGTGGTTTGCCCTCTGGAGTTGCTTCTCCATCTGATGTGCATGTACTCAGTAGAATGGGAAATCAAATTGCAGGTGGTGGTGCTCTTCAGACTCCTTATGTTGATCCGATGTATCCTCAGTATACGAGGACACCTGAGTATGCTGCAGCACAACTTGCCGCACTTAACGACCCATCTGTGGACAGGAATTACTTGGGAAACTCTTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGATCTCTACTTTCACCTCAGAAGTCACAATACAATGTTCCCTTGGGTGGAAAATCTGGTGGTTCCAACCATCATGGTTATTATGGAAATCCTGCGTATGGCGTTGGCTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTTTATCCAGTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGACCTGAATATGCATTTTGCTTCTGGAATGAGGAATGTAGCTGGGGTCATGGCACCATGGCACCTAGATGCTGGAAATTTAGATGAAAACTTCGCTTCGTCTCTGTTGGAAGAGTTTAAAAACAATAAAACGAAGTGTTTTGAACTTGCTGAAATTTCTGGGCATGTTGTTGAATTCAGTGCTGATCAATATGGGAGCCGGTTTATTCAACAAAAGCTTGAAACAGCAACTACTGACGAAAAAAATATGGTTTATCAGGAAATAACACCACATGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAGTTAGCCAACAAGCTTTATGGCCATGTTCTGACTCTTAGCCTTCAAATGTATGGTTGTCGAGTCATCCAGAAGGCCATAGAAGTTGTTGATCTGGACCAGAAGATTAAAATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGCAACCATGTTATTCAGAAGTGTATTGAATGCGTACCTGAAGATGCAATTGACTTCATTATCTCAACTTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGGTAACATCTATTCAGTGTTTTGTTACTCCTTTTATGTACCACAAAGTCCTTGAATGTAATGTAATACGTTTTACATGGCAGAGAGTACTAGAGCACTGCGAAGACCCTAACACACAACAGAAAGTTATGGATGAAATTTTAGGAGCTGTTAGCATGTTAGCCCAGGATCAGTATGGCAACTATGTCGTCCAGCATGTGCTTGAGCATGGGAAACCTCATGAGCGTTCTACAATTATCAAGGAATTAGCAGGAAATATAGTTCAAATGAGCCAGCAGAAGTTTGCATCTAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTGCTGAACGCCTATTGCTTGTAAATGAGATGCTTGGCACCACTGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCTAATTATGTCGTGCAAAAGGTGCTGGAGACTTGCGATGACCAACAGCGTGAGCTCATTCTTTCTCGAATTAAAGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCATATCGTCGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGGAGAATTGCTGCTCAGTCTCCTCATACTGCTTAG 3243 0.4385 MLSELGRRPVIGGNEGSYGDEFEKEIGMLLRDQRRHEVDDHEPELNLYRSGSAPPTVDGSLSAVGGLFGGGSTAATAAISEFSGNGFGSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFTQRLKGGASVVGGIGDRRKVNGGDDNGGRSMFATPPGFNNRKRESEVVVDEKARGSAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGRNTSVTGFPSRPASRNAFDENVDITSSAEAELAHLRHDSSSTDGLRSGSNVQGSSASQNIGPQASYSYAAALGGSSLSRSTTPDPQHIARAPSPCPTPIGSGRVSAAEKRGITSPDTFNDVSSGINGSADIMAAMSGMKLSADDGLDGDNHFQSQVESDVNNYQRYLFGMQGGQDHGKQNSYLKKSESGHLQKTAHSDSGKRSGSGSDMKNSTLDRHAEMQKSAVSPNNSYFKGSPGSPYGGGGGFPAQYQPSDGPNSPFNNYGPSGGYGGNPAVASFMANQLGTGNLPPLFENVAAASAMASPGMDSRILGGGLPSGVASPSDVHVLSRMGNQIAGGGALQTPYVDPMYPQYTRTPEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSLLSPQKSQYNVPLGGKSGGSNHHGYYGNPAYGVGLSYPGSPMANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMAPWHLDAGNLDENFASSLLEEFKNNKTKCFELAEISGHVVEFSADQYGSRFIQQKLETATTDEKNMVYQEITPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQVTSIQCFVTPFMYHKVLECNVIRFTWQRVLEHCEDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGNIVQMSQQKFASNVVEKCLTFGGPAERLLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHTA* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 826 861 IPR001313 GO:0003723
Tpr7g4709 1080 PANTHER PUMILIO HOMOLOG 1-RELATED 36 882 - -
Tpr7g4709 1080 PANTHER PUMILIO HOMOLOG 1-RELATED 900 1073 - -
Tpr7g4709 1080 SUPERFAMILY ARM repeat 701 1062 IPR016024 -
Tpr7g4709 1080 Pfam Nucleic acid binding protein NABP 303 717 IPR012940 -
Tpr7g4709 1080 SMART pum_5 826 861 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 718 753 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 790 825 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 1004 1039 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 754 789 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 862 899 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 962 997 IPR001313 GO:0003723
Tpr7g4709 1080 SMART pum_5 926 961 IPR001313 GO:0003723
Tpr7g4709 1080 MobiDBLite consensus disorder prediction 255 272 - -
Tpr7g4709 1080 MobiDBLite consensus disorder prediction 387 401 - -
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 790 825 IPR001313 GO:0003723
Tpr7g4709 1080 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 698 1065 IPR033133 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 837 860 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 722 756 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 758 789 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 866 881 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 794 827 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 1012 1041 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 966 1000 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 932 963 IPR001313 GO:0003723
Tpr7g4709 1080 Pfam Pumilio-family RNA binding repeat 908 928 IPR001313 GO:0003723
Tpr7g4709 1080 Gene3D - 698 1071 IPR011989 -
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 998 1039 IPR001313 GO:0003723
Tpr7g4709 1080 MobiDBLite consensus disorder prediction 249 272 - -
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 926 961 IPR001313 GO:0003723
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 962 997 IPR001313 GO:0003723
Tpr7g4709 1080 MobiDBLite consensus disorder prediction 289 329 - -
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 718 753 IPR001313 GO:0003723
Tpr7g4709 1080 MobiDBLite consensus disorder prediction 387 422 - -
Tpr7g4709 1080 CDD Pumilio 721 1061 IPR033712 GO:0003723
Tpr7g4709 1080 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 900 1073 - -
Tpr7g4709 1080 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 882 - -
Tpr7g4709 1080 ProSiteProfiles Pumilio RNA-binding repeat profile. 754 789 IPR001313 GO:0003723
Tpr7g4709 1080 MobiDBLite consensus disorder prediction 148 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4709 Tpr-Chr7 55343483 55349633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4709 K17943 - gmx:100818836 1690.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4709 7 55343483 55349633 Tpr7g4709 7 55343483 55349633 ECH
Tpr7g4709 7 55343483 55349633 Tpr3g2097 3 19346084 19353278 ECH