Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2097 ATGTTGTCTGAGTTGGGAAGAAGACCTATGATTGGTAATAAGGAGGGGCGTTATGGTGATGAATTGGAGAAGGAAATAGGGATGTTGCTTCGCGAGCAACGAAGACAAGAAGGCGATGATCGCGAACGAGAGCTTAATATATATAGGAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCTTTGAATGCTGTTGGAGGGTTGTTTGGTGGCGGTGGTGGTGGGGTTGGCGGTGGTGTTACGGCTGGTTTTTCTGATTTTCATGGGAATAAAGATGTGAATGGGATTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCCAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCAAAAGAGGATTGGAGGTATCAACAGAGACTTAAAGGTGGAACATCAGTTGTAGGTGGAATTGGAGATAGGAGGAAAGGTAACATGACTGATGATAATGGTGGTAGGTCAATGTTTGCAACTCCGCCGGGTTTTAACTTTGGGAAGCAAGAAAGGAACGAGGTGGAAAATGAAAAAACAAGAGGTTCCGCTGAATGGGGCGGTGATGGTTTAATCGGTTTGCCTGGCTTGGGGCTTAGGACCAAACAGAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACACCTGTCACAGGCTTTCCTTCTCGTCCAGCAAGTCGTAATGCATTTGATGAAAATGTTGATATCATAAGTACTTCTGAAGCTGAGTTGTCTCATGGATCATCTGCAACACAAAATATTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCACTTGGAGGATCTTCATTGTCAAGAAGCACTACTCCTGATCCACAACATATTGCTAGGGCTCCTAGTCCGTGCCTCACACCTATCGGTGGAGGAAGAAGTTCTGCTTCTGACAAGAGAGGCGTCGTCAGTCCGGATGCATTTAACGGTGTTTCATCTGGCAAGAATGAGTCGGCAGATCTTTTGAATGCGTTAGCAGGGATGAACTTGTCAGCAGATGATGAAAACCATTTGCCATCACAGGTTGAATCAGATGTTGATAATCATCAGAGGTACCTTTTTGGTATGCAGGGTGGTCAAGATCATGGCAAGCAACATCCATATCTAAAAAGATCTGAATCAGGGCATATGCAGAGTTCGCTTAAGAACAGTAGGAGTGGGTCAGACCTCAATAATCTATCCCTGCATAGGCAGGTTGAGCTACAAAACTCTACCGCTCCTGCGAATAACTCGTATTTCAAAGGATCACCTACCTCACATTTTAGTGGAGGTAATTTGCCAGCTCAACAGTACCAGTCTCTAGATGGTATGAATTCGTCATTTTCTAACTATGGACTAGGTGGTTATGCCGGAAATCCAGCACTGACATCCTTGATGACTAACCAATATGGCACCAGTAATCTGCCACCCTTGTTTGAAAACGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGACTCGAGAATTCTTGGAGCTGGTTTGGCTTCTGGAGGTGGTTCTCCTGATGTGCATAGTCTTGGTCGGATGGGAAATCAAATTGCAGGTGGGGCTCTTCAGGCTCCGTTTGTTGATCCGATGTATCTTCAATACATGAGGACATCAGAGTATGCTGCAGCACAACTTGCAGCTCTTAATGACCCTTCTGTGGTGGACAGGAACTACTTAGGTAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGATCTGTCCTCTCACCTCAAAAGTCGCAATACAACGTACCATTGGGTGGTAAATCAGGCAACTCCAATCATCATGGTTATTATGGAAATCAGGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCGGTTGGATCTGGAAGTCCTATTAGGCACAATGATCTGAACAACATGCGGTTTGCTTCTGGAATGAGGAACTTAGCTGGGGTCATGGGACCTTGGCATCTAGATGCCGGGAACATAGATGAAAGCTTTGCATCTTCTCTGTTGGAAGAGTTTAAAAGCAACAAAGCCAAGTGTTTTGAGCTTGCTGAAATTGCCGGTCATGTGGTTGAATTCAGTGCTGATCAATATGGAAGCCGATTCATTCAACAGAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGTTTTTTGAGCATGGGCTTGCTCCCCAGAGAAGAGAATTAGCCAACAAGCTTATTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCGACTTTATCATTTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGCTGTCGTGTGATTCAGAGAGTACTGGAGCACTGCGAAAGCGCTACAACACAGCAGAAAGTTATGGATGAGATTTTAGTAGCTGTTAGCATGTTAGCACAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGAAAGCCTCACGAGCGTTCTACTATAATAAAGGAGTTAGCTGGGAGGATAGTTCAAATGAGTCAGCAAAAGTTTGCCTCCAATGTTGTGGAGAAATGCTTGACCTTCAGTGGTCCTTCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACGGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAGTTTGCAAACTATGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCATCAACGTGAGCTGATTCTTTCACGAATCAAGGTTCATTTGAATGCATTAAAAAAGTACACCTATGGAAAGCATATCGTCGCGCGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGAAGAGTTGCTGCACAGACTCCTCAACCTGCTTAG 3096 0.4406 MLSELGRRPMIGNKEGRYGDELEKEIGMLLREQRRQEGDDRERELNIYRSGSAPPTVEGSLNAVGGLFGGGGGGVGGGVTAGFSDFHGNKDVNGIVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRYQQRLKGGTSVVGGIGDRRKGNMTDDNGGRSMFATPPGFNFGKQERNEVENEKTRGSAEWGGDGLIGLPGLGLRTKQKSLAEIFQDDMERNTPVTGFPSRPASRNAFDENVDIISTSEAELSHGSSATQNIGLPASYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRSSASDKRGVVSPDAFNGVSSGKNESADLLNALAGMNLSADDENHLPSQVESDVDNHQRYLFGMQGGQDHGKQHPYLKRSESGHMQSSLKNSRSGSDLNNLSLHRQVELQNSTAPANNSYFKGSPTSHFSGGNLPAQQYQSLDGMNSSFSNYGLGGYAGNPALTSLMTNQYGTSNLPPLFENVAAASAMASPGMDSRILGAGLASGGGSPDVHSLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPLGGKSGNSNHHGYYGNQAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHLDAGNIDESFASSLLEEFKSNKAKCFELAEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCESATTQQKVMDEILVAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGRIVQMSQQKFASNVVEKCLTFSGPSERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRVAAQTPQPA* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2097 1031 SMART pum_5 913 948 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 955 990 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 696 731 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 732 767 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 877 912 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 768 803 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 840 876 IPR001313 GO:0003723
Tpr3g2097 1031 SMART pum_5 804 839 IPR001313 GO:0003723
Tpr3g2097 1031 MobiDBLite consensus disorder prediction 385 403 - -
Tpr3g2097 1031 Pfam Nucleic acid binding protein NABP 293 695 IPR012940 -
Tpr3g2097 1031 Gene3D - 676 1022 IPR011989 -
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 913 948 IPR001313 GO:0003723
Tpr3g2097 1031 MobiDBLite consensus disorder prediction 367 403 - -
Tpr3g2097 1031 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1024 - -
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 815 838 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 700 734 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 844 879 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 772 805 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 736 770 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 917 951 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 883 914 IPR001313 GO:0003723
Tpr3g2097 1031 Pfam Pumilio-family RNA binding repeat 963 992 IPR001313 GO:0003723
Tpr3g2097 1031 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 676 1016 IPR033133 GO:0003723
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 840 876 IPR001313 GO:0003723
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 877 912 IPR001313 GO:0003723
Tpr3g2097 1031 CDD Pumilio 697 1012 IPR033712 GO:0003723
Tpr3g2097 1031 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1024 - -
Tpr3g2097 1031 SUPERFAMILY ARM repeat 679 1013 IPR016024 -
Tpr3g2097 1031 MobiDBLite consensus disorder prediction 142 193 - -
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 696 731 IPR001313 GO:0003723
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 839 IPR001313 GO:0003723
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 949 990 IPR001313 GO:0003723
Tpr3g2097 1031 MobiDBLite consensus disorder prediction 278 315 - -
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 732 767 IPR001313 GO:0003723
Tpr3g2097 1031 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2097 Tpr-Chr3 19346084 19353278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2097 K17943 - gmx:100803806 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2097 3 19346084 19353278 Tpr3g2097 3 19346084 19353278 ECH
Tpr7g4709 7 55343483 55349633 Tpr3g2097 3 19346084 19353278 ECH