Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4629 ATGGTTTCTACAACTACAATGCCATCATCACTCTCATTTTTGGTCCACATGGTTCCTCTCTTTTCTCTTTTACTCTCATTCATGATTTGCAGTAGTAGTAATGCTCAAGGTTTACCTTCACCAGGGTACTACCTTAGTTCCAAAGTAAGCACTATTAACTTTGATCAAGGATTTAGAAACCTTTGGGGACCTCAGCATGAAAAACTAGACCAAGGATCAGTATCAATCTGGCTTGACTCTAACTCAGGAAGTGGATTCAAGTCGCATCACTCTTATAAATCTGGATACTTTGGTGTTGCGGTTAAGCTTCAACCGGGTTATACCGCAGGAGTCATTACATCTTTCTATCTTTCAAACAATCAAGACTACCCAGGAAATCATGATGAAATAGACATTGAATTCCTAGGTACAACACAAGATAAGCCATATGTGTTGCAAACAAATGTGTACATCAAAGGAAGTGGAGATGGGAAGATTATAGGAAGAGAGATGAAATTTCATCTTTGGTTTGATCCAACTCAAGATTTTCACAACTATGCCATCTTGTGGAAACCCAGTGAGATCATTTTTTTAGTGGATGATGTTCCAATAAGAAGGTATCCTAGGAAGAGTGATTCAACATTCCCTTCAAGACCAATGTATGTGTACGGTTCAATATGGGATGCATCTCCATGGGCTACAGAGAATGGAAAATACAAAGCAGATTATAATTATCAACCCTTCATTGGTAAATACAAAAATTTCAAATTACAATGTTGTACCATTGATTCCACCTCCTCCTCGTGTCGGCCACCTTCTGTTTCGCCTTCCGGATATGGCGGCAAGCTCAGCCCTCAACAAAATACTGCAATGCAATGGGTCCAAAATAATTACTTGGTATATAATTATTGTCACGATCCTCAGAGAGACCATACACTTACTCCAGAATGCTGA 933 0.3912 MVSTTTMPSSLSFLVHMVPLFSLLLSFMICSSSNAQGLPSPGYYLSSKVSTINFDQGFRNLWGPQHEKLDQGSVSIWLDSNSGSGFKSHHSYKSGYFGVAVKLQPGYTAGVITSFYLSNNQDYPGNHDEIDIEFLGTTQDKPYVLQTNVYIKGSGDGKIIGREMKFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDSTFPSRPMYVYGSIWDASPWATENGKYKADYNYQPFIGKYKNFKLQCCTIDSTSSSCRPPSVSPSGYGGKLSPQQNTAMQWVQNNYLVYNYCHDPQRDHTLTPEC* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4629 310 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 275 310 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tpr7g4629 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 310 IPR044791 GO:0004553
Tpr7g4629 310 Pfam Glycosyl hydrolases family 16 56 237 IPR000757 GO:0004553|GO:0005975
Tpr7g4629 310 Gene3D - 34 310 - -
Tpr7g4629 310 PIRSF EndGlu_transf 12 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr7g4629 310 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 33 245 IPR000757 GO:0004553|GO:0005975
Tpr7g4629 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 19 310 - -
Tpr7g4629 310 SUPERFAMILY Concanavalin A-like lectins/glucanases 53 310 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4629 Tpr-Chr7 54712702 54715306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4629 20 310 Glycoside Hydrolase AT3G44990 64.261 4.75e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4629 K08235 - gmx:100781528 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4629 7 54712702 54715306 Tpr4g1643 4 16803329 16806323 PCT