Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1643 ATGCCATTATCATCATCACCACCCTCTAATTTCTTTCATATGGTTCCTATATTATGTCTTCTTATACTATCACTCACAATCTTTTCTTCTAATGCTCAGGGTCCACCTTCACCTGGCTACTACCCTAATTCCAAAATTAGTCCTATTTCCTTTAGTCAAGGCTTTAGAAACCTTTGGGGACCTCAACATCAAAAATTGGACCAAAACTCATTAACAATATGGCTTGACTCCAACACAGGTAGTGGATTCAAGTCACTTCACTCATATAAATCTGGATACTTTGGTGCTGATATTAAGCTTCAACCTGGCTATACTGCTGGAGTTATTACTTCTCTCTATCTTTCAAATAATCAAGATTTTCCAGGAAACCATGATGAAGTTGACATTGAGTTTCTTGGCACAACACCAGGTAAGCCATATGTGTTGCAGACAAATGTATATATCAAAGGAAGTGGAGATAGGAATGTTATAGGAAGAGAGATGCAGTTTCATCTTTGGTTTGACCCAACTCAAGATTTTCACAACTATGCTATTCTATGGAAAGCCAGTGAGATAATATTTTTAGTAGATGATGTTCCCATAAGAAGGTATCCTAGGAAAAGTGATGCCACCTACCCTTCAAGACCAATGTATGTGTATGGTTCAATTTGGGATGCATCTTCTTGGGCAACAGAAGATGGAAAATACAAAGCAGATTATAGATACCAACCCTTTGTTGGAAGGTACAAAAATTTCAAATTACAAGGTTGTACCACACAAAGCCCTTCCTCATGTCAATCTCCCTCTGGCTCTCCATCTGGCTATAGTAGCCTTAGCCCTCAACAATATATGGCTATGCAATGGGTCCAAAATAATCATATGGTGTATAATTATTGTCATGACCCTAGAAGAGACCACAATCTTATCCCTGAGTGTTAA 918 0.3813 MPLSSSPPSNFFHMVPILCLLILSLTIFSSNAQGPPSPGYYPNSKISPISFSQGFRNLWGPQHQKLDQNSLTIWLDSNTGSGFKSLHSYKSGYFGADIKLQPGYTAGVITSLYLSNNQDFPGNHDEVDIEFLGTTPGKPYVLQTNVYIKGSGDRNVIGREMQFHLWFDPTQDFHNYAILWKASEIIFLVDDVPIRRYPRKSDATYPSRPMYVYGSIWDASSWATEDGKYKADYRYQPFVGRYKNFKLQGCTTQSPSSCQSPSGSPSGYSSLSPQQYMAMQWVQNNHMVYNYCHDPRRDHNLIPEC* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1643 305 Gene3D - 31 305 - -
Tpr4g1643 305 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 269 305 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tpr4g1643 305 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 30 242 IPR000757 GO:0004553|GO:0005975
Tpr4g1643 305 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 17 305 - -
Tpr4g1643 305 Pfam Glycosyl hydrolases family 16 53 234 IPR000757 GO:0004553|GO:0005975
Tpr4g1643 305 PIRSF EndGlu_transf 13 305 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr4g1643 305 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 17 305 IPR044791 GO:0004553
Tpr4g1643 305 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 305 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1643 Tpr-Chr4 16803329 16806323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1643 18 305 Glycoside Hydrolase AT3G44990 66.323 3.08e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1643 K08235 - gmx:100781528 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1643 4 16803329 16806323 Tpr4g1643 4 16803329 16806323 ECH
Tpr7g4629 7 54712702 54715306 Tpr4g1643 4 16803329 16806323 PCT