Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4445 ATGGAGTTTCTCACTTTACTTTGTGCTTTTACAATAATGCACTTGTGCTACCTGATCTGGAAAGTTTATGATCAGAGAAGGGACCAACAGTGTTACATATTAAACTACCAATGTTACAAACCAGGTGATGAAAGAAAGCTTGGAAGCGAACGTTGTGGAAAGATCATAGGAAATAATGATGATATTGGTCTGAATGAGTGCAAGTTCTTCCTTAAAGCCATTGTCAACTCAGGCATTGGTGAGGAAACTTATGCTCCAAGAAACTTCGTCGAAGGCCGAGCCACAAACCCAACATTGCAAGACGGAATCGAAGAGATGGAAGAGTTTTGTCATGAAAGCATTGCGAAACTTCTAAACAAATCAGGCATTTCACCATCGGAGATCGATGTTCTTGTGGTAAATGTATCTTTGTTTTCTGCTGTCCCTTCTTTAACTTCTAGAATCATTAACCATTACAAAATGAGAGAGGACATAAAAGCTTATAACCTAGCTGGTATGGGTTGTAGTGCTAGTCTTATTTCATTAGACATTATTCAAAACATTTTCAAGTCACAAAAGAACAAGTATGCTCTTTTGTTGACATCAGAATCTTTGAGTCCAAATTGGTATTCAGGCAACAACAGGTCAATGATCCTTGCAAATTGTCTTTTCCGCATTGGCGGATGTGCAATTCTTCTCACAAATAAAAGATCCTTAAAGCATAAAGCTATACTAAAATTGAAGCATTTAGTTAGGACTCATCACGGTGCCAGAGATGACGCACATAACTGTTGTAGTCAAAAAGAAGACGAACAAGGTAAGCTCGGTTTTTTCCTAGCTAAAGATCTTCCAAAAGCCGCTACAAGAGCTTTCGTCGATAATTTAAGAGTGTTATCGCCTAAAATTTTACCAGCAAGGGAATTATTTAGGTTTCTATTCATGTCAGTCATAAAAAAAGTGTCAAAATTTCATGTCCCTAAGTCAGCTGCAGGTGGTGTTGGTGGTACAAGTAACAAATCACCATTGAATTTCAAAACCGGCGTTGATCATTTTTGCCTTCACACTGGAGGAAAAGCTGTGATCGATGGAATAGGTATGAGTTTAGATCTGAATGAGTATGATCTTGAGCCAGCAAGAATGTCCTTGCATAGATTTGGTAACACATCAGCAAGTAGTTTATGGTATGTGTTAGGATATATGGAAGCTAAGAAGAGGTTGAAGAAAGGTGAGAGAGTATTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAACAGTTGTTTGTGGGAAGTAATGAGAGATGCTGATGATAGAAATGTGTGGGACGATTGCATTGATTACTATCCACCACACTCCTTAGCCAACCCATTCATGGAGAAGTACGGTTGGATTAACAATCTTGAAGATGCAAGCACTTTCAAACACAAGCTTGCTCAGTTTCTTCAAAACTGA 1428 0.3838 MEFLTLLCAFTIMHLCYLIWKVYDQRRDQQCYILNYQCYKPGDERKLGSERCGKIIGNNDDIGLNECKFFLKAIVNSGIGEETYAPRNFVEGRATNPTLQDGIEEMEEFCHESIAKLLNKSGISPSEIDVLVVNVSLFSAVPSLTSRIINHYKMREDIKAYNLAGMGCSASLISLDIIQNIFKSQKNKYALLLTSESLSPNWYSGNNRSMILANCLFRIGGCAILLTNKRSLKHKAILKLKHLVRTHHGARDDAHNCCSQKEDEQGKLGFFLAKDLPKAATRAFVDNLRVLSPKILPARELFRFLFMSVIKKVSKFHVPKSAAGGVGGTSNKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLNEYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCLWEVMRDADDRNVWDDCIDYYPPHSLANPFMEKYGWINNLEDASTFKHKLAQFLQN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4445 475 Gene3D - 64 423 IPR016039 GO:0016746
Tpr7g4445 475 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 341 422 IPR013747 -
Tpr7g4445 475 SUPERFAMILY Thiolase-like 17 231 IPR016039 GO:0016746
Tpr7g4445 475 Pfam FAE1/Type III polyketide synthase-like protein 24 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Tpr7g4445 475 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tpr7g4445 475 CDD CHS_like 19 421 - -
Tpr7g4445 475 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 - -
Tpr7g4445 475 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tpr7g4445 475 SUPERFAMILY Thiolase-like 241 424 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4445 Tpr-Chr7 53250056 53252174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4445 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 66.667 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4445 K15397 - gmx:100776947 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4445 7 53250056 53252174 Tpr4g1784 4 18570306 18572466 PCT