Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4181 ATGACTAGGATGTCTTGTCTCTTGGGATTTTCTGTGTGTTTTTTGTTTGTTGGGTTAGTTGCTTCTTCTAAATTTGAGGAACTTTTTCAACCTGGTTGGGCTATGGACCATTTTGAACATCAAGGAGATTTACTCAAACTCAAACTTGACAATTATTCTGGTGCTGGATTTGGATCTAAGAGCAAGTATATGTTTGGGAAAGTGACTGTGCAGCTTAAGCTTGTGGAGGGTGATTCTGCTGGAACTGTTACTGCTTTCTATATGTCATCAGAAGGCCCAAATCATAATGAATTTGATTTTGAGTTTTTGGGCAACACCACTGGTGAACCATACTCAGTTCAAACCAATGTGTATGTTAATGGTGTTGGTAATAGGGAACAAAGACTTAACCTATGGTTTGATCCATCTAAGGATTTTCATACCTACTCAATTTTTTGGAACCAACGTCAAGTTGTGTTTCTAGTGGATGAGACACCAATAAGGGTACACACAAATTTGGAACACAAAGGAATTCCTTTTCCAAAAGACCAAGCAATGGGGGTATACAGTTCAATATGGAATGCAGATGATTGGGCCACACAAGGTGGACGTGTGAAAACAGATTGGAGTCATGCACCTTTTGTTGCTACCTACAAAGATTTTGAGATTAATGCTTGTGAATGTCCTGTGCCAGTGACATCAAATGATAATGCTAAGAAATGTAGTAGTAGTGAAGATAAAAAATATTGGTGGGATGAGCCTATGTTATCTGAACTCACTATTCATCAAAGTCATCAACTTATTTGGGTTAGGGCTAATCATATGGTTTATGATTATTGTGCTGATACCGCTAGGTTCCCCGTCATACCTGTTGAATGTGTTCGTCACCATCACCAGTGA 879 0.3879 MTRMSCLLGFSVCFLFVGLVASSKFEELFQPGWAMDHFEHQGDLLKLKLDNYSGAGFGSKSKYMFGKVTVQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPSKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFEINACECPVPVTSNDNAKKCSSSEDKKYWWDEPMLSELTIHQSHQLIWVRANHMVYDYCADTARFPVIPVECVRHHHQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4181 292 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 289 - -
Tpr7g4181 292 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 289 IPR013320 -
Tpr7g4181 292 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 211 IPR000757 GO:0004553|GO:0005975
Tpr7g4181 292 PIRSF EndGlu_transf 1 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr7g4181 292 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 289 IPR044791 GO:0004553
Tpr7g4181 292 Pfam Glycosyl hydrolases family 16 29 203 IPR000757 GO:0004553|GO:0005975
Tpr7g4181 292 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 286 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tpr7g4181 292 Gene3D - 16 292 - -
Tpr7g4181 292 CDD GH16_XET 21 286 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr7g4181 292 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Tpr7g4181 292 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Tpr7g4181 292 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4181 Tpr-Chr7 50914408 50916691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4181 55 291 Glycoside Hydrolase AT4G03210 75.949 3.81e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4181 K08235 - gmx:100801567 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4181 7 50914408 50916691 Tpr7g4181 7 50914408 50916691 ECH
Tpr4g1387 4 13461538 13465230 Tpr7g4181 7 50914408 50916691 PCT