Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1387 ATGTTTTCCAAAATGTGTGGGTTTTTTGTTTGTCTTATGTTGGTGTTTTGTGTGTCTTTGTCTTCCTCTTCTAAGTTTGATGAACTCTTTCAACCAAGTTGGGCTTTAGACCATTTTGTCCATGAAGGAAATCTCCTTAAACTCAAACTTGATAACTCTTCTGGTGCTGGTTTTGGATCCAAAAGCAAGTATATGTTTGGGAAAGTATCTATCCAACTTAAGCTTGTTGAAGGTGACTCTGCTGGAACTGTAACTGCTTTCTATATGTCATCGGACGGTCCAAAACACAACGAGTTTGATTTTGAATTTTTAGGCAATAGCACAGGGGAACCTTATTCTGTTCAAACAAATGTGTATGTGAATGGAGTTGGTAATCGTGAGCAGAGACTTGACCTTTGGTTTGATCCCACTAAAGATTTTCACTCTTACTCTATTTTCTGGAATCAACGCCAAGTTGTATTTCTAGTAGATGAAACACCAATAAGAGTACACACAAACATGGAACACAAGGGTATCCCTTATCCAAAGGATCAACCAATGGGTGTATACAGTTCAATATGGAATGCAGATAATTGGGCAACACAAGGAGGAAGAGTGAAAACAGATTGGTCTCATGCACCTTTCATTGCAACTTATAAATCCTTTGAAATTAATGCTTGTGAATGTCCTGTTTCAGTTGCTGCAATGGATAATACAAAGAGGTGTAGTAGTAGTGAAGATAAAAAATATTGGTGGGATGAGCCTAATTTGTCTGTGCTTAATTTGCATCAAAGTCATCAACTTATGTGGGTTAGGAATCATCATATGGTTTATGATTATTGTAATGATGGTTCTAGGTTTCCTGTTACGCCGGTTGAGTGTGTTCATCATCATCATAGTTAG 882 0.3741 MFSKMCGFFVCLMLVFCVSLSSSSKFDELFQPSWALDHFVHEGNLLKLKLDNSSGAGFGSKSKYMFGKVSIQLKLVEGDSAGTVTAFYMSSDGPKHNEFDFEFLGNSTGEPYSVQTNVYVNGVGNREQRLDLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPYPKDQPMGVYSSIWNADNWATQGGRVKTDWSHAPFIATYKSFEINACECPVSVAAMDNTKRCSSSEDKKYWWDEPNLSVLNLHQSHQLMWVRNHHMVYDYCNDGSRFPVTPVECVHHHHS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1387 293 Pfam Glycosyl hydrolases family 16 30 204 IPR000757 GO:0004553|GO:0005975
Tpr4g1387 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 291 - -
Tpr4g1387 293 Gene3D - 13 293 - -
Tpr4g1387 293 PRINTS Glycosyl hydrolase family 16 signature 56 74 IPR008264 GO:0004553|GO:0005975
Tpr4g1387 293 PRINTS Glycosyl hydrolase family 16 signature 114 127 IPR008264 GO:0004553|GO:0005975
Tpr4g1387 293 PRINTS Glycosyl hydrolase family 16 signature 132 149 IPR008264 GO:0004553|GO:0005975
Tpr4g1387 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 290 IPR013320 -
Tpr4g1387 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tpr4g1387 293 CDD GH16_XET 22 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr4g1387 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr4g1387 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 291 IPR044791 GO:0004553
Tpr4g1387 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 212 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1387 Tpr-Chr4 13461538 13465230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1387 56 292 Glycoside Hydrolase AT4G03210 72.996 7.46e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1387 K08235 - gmx:100785982 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1387 4 13461538 13465230 Tpr7g4181 7 50914408 50916691 PCT