Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3854 ATGACACAAGTTCTCCACTCTCCACCTCATTTTACTTCATCATCACCAACAACATCATCTTCAACTTCTTCAACTTCTTCTCCTCTTTCTTCTTTCTCTTGTCATGCCATTTTTCAACCTCCTTCACAACCTCATTTTCCACTTTTTGAACTTTTAGTTACTCTTTTTAGAAAATCATTATTTCCTTTCAAGAATAGTGGCAACAAGGAACTTTGTAATATGGACATTAGCTCTCCGACTAACGTGCGCCATGTTGCGCACGTTACTTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGATGAGTTCGAACCCGATTTTCCCAGAAGGCCACCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTGTTGTTAATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAGGTTGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGGACCAATTGAACTTAGGATTGGTTCCTGAAGACATTGATGTACATTGTTTAGCAGGACTAATTAAGGCTTGGTTTAGGGAACTTCCGACCGCCGTTCTGGATTCATTATCACAAGAGCAGGTAATGCAATGCCAAACTGAGGAAGACAGTATTGTACTAGTGAGGCATCTACCTCATACTGAAGCCGCGCTCTTGGACTGGGCCATCAATCTAATGGCAGATGTAGTCCAATACGAACATCTTAATAAGATGAATGCACGCAACATTGCCATGGTTTTCGCACCAAACATGACTCGGATGGCCGATCCATTAACTGCGTTGATGTACGCAGTTCAAGTGATGAACTTTTTGAAGACACTTATATTAAGGACGCTACGAGAAAGAAAGGATTCAGTGGTTGAATTGAATCCTAGATTGAATTTTGAACCTTCTGATGAGAATGGACACCGTAGACTTTTCGAGTCGTGTCAGAAAGAAGATACTGCATCAGCAGCAGCAGCAGAATATGAAGAGGCTCAGGAAAATTTTGTTTCAGAAAAATCTGTCTTAGAATATTCACCTGAATCACTCGAAAAAAATTCCTCAACTGGAGAAGAATCTGCCAGTTTGATAAGCACTTCTGAGAATCAAATTTCGAATGAGGATTTGTATTGTGAGTTTCCACCGAAAAGAAACATGGGGAAGAATAACAAGTCTAGTCAATCAAGTAGTTCAAATGCTAGAAAAGGGTCTAAAAAGACAAGAAGCCAACAACCTGCGATCAATGGAAAAGCATCGGTCGAGAAAAAGGGAATGAGGACTTTGAGTAACACAGATACAAGATCCGACCGAGTCGAAGCTTGGCGCTGA 1368 0.4072 MTQVLHSPPHFTSSSPTTSSSTSSTSSPLSSFSCHAIFQPPSQPHFPLFELLVTLFRKSLFPFKNSGNKELCNMDISSPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQGGLQVEGIFRINADNSQEEHVRDQLNLGLVPEDIDVHCLAGLIKAWFRELPTAVLDSLSQEQVMQCQTEEDSIVLVRHLPHTEAALLDWAINLMADVVQYEHLNKMNARNIAMVFAPNMTRMADPLTALMYAVQVMNFLKTLILRTLRERKDSVVELNPRLNFEPSDENGHRRLFESCQKEDTASAAAAEYEEAQENFVSEKSVLEYSPESLEKNSSTGEESASLISTSENQISNEDLYCEFPPKRNMGKNNKSSQSSSSNARKGSKKTRSQQPAINGKASVEKKGMRTLSNTDTRSDRVEAWR* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3854 455 MobiDBLite consensus disorder prediction 353 381 - -
Tpr7g3854 455 Pfam P21-Rho-binding domain 75 108 IPR000095 -
Tpr7g3854 455 Gene3D CRIB domain 72 105 IPR036936 -
Tpr7g3854 455 MobiDBLite consensus disorder prediction 440 455 - -
Tpr7g3854 455 SUPERFAMILY GTPase activation domain, GAP 116 295 IPR008936 GO:0007165
Tpr7g3854 455 PANTHER MKIAA1688 PROTEIN 1 455 IPR044785 GO:0005096
Tpr7g3854 455 MobiDBLite consensus disorder prediction 394 455 - -
Tpr7g3854 455 MobiDBLite consensus disorder prediction 399 429 - -
Tpr7g3854 455 Gene3D Rho GTPase activation protein 106 312 IPR008936 GO:0007165
Tpr7g3854 455 SMART PBD_5 76 110 IPR000095 -
Tpr7g3854 455 ProSiteProfiles Rho GTPase-activating proteins domain profile. 121 306 IPR000198 GO:0007165
Tpr7g3854 455 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 455 - -
Tpr7g3854 455 MobiDBLite consensus disorder prediction 1 22 - -
Tpr7g3854 455 CDD RhoGAP 138 294 - -
Tpr7g3854 455 Pfam RhoGAP domain 138 272 IPR000198 GO:0007165
Tpr7g3854 455 ProSiteProfiles CRIB domain profile. 76 89 IPR000095 -
Tpr7g3854 455 SMART RhoGAP_3 135 298 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3854 Tpr-Chr7 47799287 47802567 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3854 - K20642 ccaj:109798318 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3854 7 47799287 47802567 Tpr7g3854 7 47799287 47802567 ECH
Tpr7g3854 7 47799287 47802567 Tpr4g1506 4 14832484 14835611 PCT