Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1182 ATGAAGAAGAATGCGGAATTCGAGCATGTTCTTAGATATTTTGATGAAGATGGTGATGGAAATGTTTCACCAACAGAGCTAAGACATAAGCTAAGAGTAATGGGAGAAGAGCTTTTGTTGAAAGAAGTTGAAATGGCTATTGAAGCAATGGATTCAGATGGTGATGGTTATTTGAGTTTGGAGGATTTGATTTGTTTGATGGAGGAAGGTGGAGAGGAACAAAAGTTGAAGGATTTGAGAGAAGCATTTGAGATGTATGATAGTGAAAATTGTGGTTTTATAACTCCAAAGAGTTTGAAGAGGATGCTTAAGAAGATGGGGGAATCTAAGTCCATTGATGAATGTAAAGCTATGATTAAGCATTTTGATTTGAATGGTGATGGTTTGCTTAGCTTTGATGAATTCACAGTAATGATGCAGTGA 423 0.3617 MKKNAEFEHVLRYFDEDGDGNVSPTELRHKLRVMGEELLLKEVEMAIEAMDSDGDGYLSLEDLICLMEEGGEEQKLKDLREAFEMYDSENCGFITPKSLKRMLKKMGESKSIDECKAMIKHFDLNGDGLLSFDEFTVMMQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1182 140 CDD EFh 6 67 IPR002048 GO:0005509
Tpr7g1182 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Tpr7g1182 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Tpr7g1182 140 Pfam EF-hand domain pair 10 67 IPR002048 GO:0005509
Tpr7g1182 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Tpr7g1182 140 Gene3D - 73 140 - -
Tpr7g1182 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Tpr7g1182 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 140 - -
Tpr7g1182 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Tpr7g1182 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Tpr7g1182 140 CDD EFh 78 140 IPR002048 GO:0005509
Tpr7g1182 140 Gene3D - 1 72 - -
Tpr7g1182 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 140 - -
Tpr7g1182 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Tpr7g1182 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Tpr7g1182 140 SMART efh_1 42 70 IPR002048 GO:0005509
Tpr7g1182 140 SMART efh_1 78 106 IPR002048 GO:0005509
Tpr7g1182 140 SMART efh_1 6 34 IPR002048 GO:0005509
Tpr7g1182 140 SMART efh_1 114 140 IPR002048 GO:0005509
Tpr7g1182 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1182 Tpr-Chr7 11835895 11836760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1182 3 140 EF-hand Containing Proteins AT1G76650 47.101 2.13e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1182 K13448 - gmx:100779557 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2756 5 49680524 49681688 Tpr7g1182 7 11835895 11836760 ECH
Tpr7g1182 7 11835895 11836760 Tpr7g1182 7 11835895 11836760 ECH