Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2756 ATGATGAGTCCTAACATGGAATTTGAGCGGGTTCTTAGTTATTTTGATGAGGATGGTGACGGAAAGATTTCGCCGAACGAGTTAAGGAGTAGAATGATGAAGATTGGTGGAGAGTTTCAATTAAAAGAAGCGGAAATCGCTATTGAGGCATTGGATTCTGATGGTGATGGATTATTGTGTTTGGAGGATTTGATAAGGCTTATGAAATCAGGAGGAGAGGAAGAGAAATTGAAGGATTTGAGAGAAGCTTTTGAAATGTATGTTAGTGAAGAGTGTGGGTTCATAACACCAAAGAGTTTGAAGAGGATGTTGAAAAAATTAGGGGATTCTAAGTCTATTGAGGAATGTAAATTGATGATTGGTAAGTTTGATTTGGATGGGGATGGTGTTCTTAGTTTTCAAGAATTCAGAATCATGATGGAGTGA 426 0.3756 MMSPNMEFERVLSYFDEDGDGKISPNELRSRMMKIGGEFQLKEAEIAIEALDSDGDGLLCLEDLIRLMKSGGEEEKLKDLREAFEMYVSEECGFITPKSLKRMLKKLGDSKSIEECKLMIGKFDLDGDGVLSFQEFRIMME* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2756 141 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Tpr5g2756 141 SMART efh_1 7 35 IPR002048 GO:0005509
Tpr5g2756 141 SMART efh_1 115 141 IPR002048 GO:0005509
Tpr5g2756 141 SMART efh_1 43 71 IPR002048 GO:0005509
Tpr5g2756 141 SMART efh_1 79 107 IPR002048 GO:0005509
Tpr5g2756 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Tpr5g2756 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Tpr5g2756 141 Gene3D - 3 72 - -
Tpr5g2756 141 CDD EFh 7 69 IPR002048 GO:0005509
Tpr5g2756 141 Pfam EF hand 48 68 IPR002048 GO:0005509
Tpr5g2756 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Tpr5g2756 141 Pfam EF hand 7 34 IPR002048 GO:0005509
Tpr5g2756 141 Gene3D - 73 141 - -
Tpr5g2756 141 SUPERFAMILY EF-hand 7 140 IPR011992 -
Tpr5g2756 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 141 - -
Tpr5g2756 141 CDD EFh 79 140 IPR002048 GO:0005509
Tpr5g2756 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Tpr5g2756 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Tpr5g2756 141 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Tpr5g2756 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 141 - -
Tpr5g2756 141 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2756 Tpr-Chr5 49680524 49681688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2756 5 140 EF-hand Containing Proteins AT1G76650 48.529 3.48e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2756 K13448 - gmx:100816563 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2756 5 49680524 49681688 Tpr7g1182 7 11835895 11836760 ECH
Tpr5g2756 5 49680524 49681688 Tpr5g2756 5 49680524 49681688 ECH