Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0639 ATGTCTAAAGTTTTCAGCTTTACTGGAAGTGATGATTTTTTTACTGGGAGGTCATTATACCCTAATCCGAAGGAGGCGGGTCTCTTCTTGTCTCTTGGCCGTCAAGAGTATGGTTACAAACCTCTTCCGAAGAGATCTCGTGTTAGCGTTCCATTTGATTTCAGTGGAGAAAAATGGTTTGATCAGAAGCCAGAGACAACTATCGAAACATTGCCCGATGAATGTCTCTTCGAGATCCTTAGAAGGTTGCCTGAAGGACAGGACAGGAGTTTATGCGCTTCTGTATCAAAACGCTGGCTTATGCTTCTGAGCAGTATTTGCAAGAATGAAATCTGCAGCAATGCAAGTACCAAAAATGGAAACGAGGATAGTGATGAAGGGTATCTTTCTCGAAGCTTGGACGGAAAGAAAGCAACAGATGTTAGACTAGCTGCCATTGCTGTTGGCACAGCATCTCGTGGAGGACTAGGGAAGCTTTCGATTCATAGATCCAATTCAGATCGTCCATTGACTGATGTAGGTCTCAAGGCAGTTGCTCATGGCTGCCCGTCTCTAAAGTTTCTCAATCTTTGGGATGTTGCTACCATTACTGACGAAGGCCTCGTTGAGATTGCTAATGGTTGTCACCAGTTAGAGAAGCTCGACCTTTGCAAGTTGCCCACAATTTCTGACAAGGCTTTAATTGCAGTTGCAAAGAACTGCCCGAAGCTGAACGAGTTATCGATAGAGTCATGTCCTAATATCGGTAATGAAGGTCTTAAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCTGTATCAATTAAAAACTGTCCTGGAGTTGGTGATCAGGGAATTGCTGGCATGGTATCTGCAGCATCCTTTGTTCTAACAAATGTGACACTTGAATCGCTTGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGATTTGTGGTTACCGATCTTGTCCTAAATTCCCTTGCAAATGTCACCGAGAAGGGATTCTGGGTGATGGGTAATGGCCGTGCACTGCAGAAACTGACGTCGCTCACAATTGGGTCGTGCCCAGGAGTAACAGATGTTGGGCTTGAAGCTATCGGAAAGGGTTGTCCAAATGTGAAAAACTTTGAGCTTCATAGGTGTGCATTTCTGTCGGATAATGGATTGCTATCATTCACCAAGGTAGCTCCATCAATTAAGAGCCTACAATTGGAAGAGTGCCACAGGATTACCCAACTAGGACTTGTCGGTGTCCTTTTTTATTGCAGTGCAAAATTGAAGGCTCTTACTCTGGTACGCTGCTATGGGATCAAAGATATGAATCTTGTATTGCCAGCAGTATCTCCTTGTGAATCAGTTTCATCCTTATCAATCCTTAACTGCCCTGGAGTTGGTAATTCTACTCTTGCTGTCATTGGGAAGCTTTGTCCTTTGCTTCATAAACTTGAATTGGTTGGACTTGAGGGAGTAACAGACACAGGGTTTATTTCTCTGCTTGAGAGTTCTAAGGCCAGTTTGTTTAATGTTAATCTAAGTGGTTGCATTAATCTGACAGATGCAGGAGTTTTGTGCATGGTCAAGTTGCATTGTTTGACTCTTGATGTGCTAAACCTCAGCTGTTGTAAAAAAGTCGGCGATGCTAGCTTGACAGCAATTGCAAGAGAGTGCCCATTGCTGAGTGATCTTGATGTTTCCAGTTGCGCAATCACTGATGCAGGGATTAGGGCCATTGCTCATGGAGACCAGGTGGATCTGGAGGTGCTTTGTTTGGCAGGTTGCAATTCCGTTACAAACAAGAGCCTGCAAGCTTTGAAAAAAATGGATTCTCTCCAGGGATTAAATATAAAAAATTGCAAGTCACTCAGCAGCCGCACAGTTGACAAGCTTATTGATCATCTTTGGATGTGTGACATCCTCTTCTGA 1911 0.4354 MSKVFSFTGSDDFFTGRSLYPNPKEAGLFLSLGRQEYGYKPLPKRSRVSVPFDFSGEKWFDQKPETTIETLPDECLFEILRRLPEGQDRSLCASVSKRWLMLLSSICKNEICSNASTKNGNEDSDEGYLSRSLDGKKATDVRLAAIAVGTASRGGLGKLSIHRSNSDRPLTDVGLKAVAHGCPSLKFLNLWDVATITDEGLVEIANGCHQLEKLDLCKLPTISDKALIAVAKNCPKLNELSIESCPNIGNEGLKAIGKLCPNLRSVSIKNCPGVGDQGIAGMVSAASFVLTNVTLESLAVSDYSLAVIGQYGFVVTDLVLNSLANVTEKGFWVMGNGRALQKLTSLTIGSCPGVTDVGLEAIGKGCPNVKNFELHRCAFLSDNGLLSFTKVAPSIKSLQLEECHRITQLGLVGVLFYCSAKLKALTLVRCYGIKDMNLVLPAVSPCESVSSLSILNCPGVGNSTLAVIGKLCPLLHKLELVGLEGVTDTGFISLLESSKASLFNVNLSGCINLTDAGVLCMVKLHCLTLDVLNLSCCKKVGDASLTAIARECPLLSDLDVSSCAITDAGIRAIAHGDQVDLEVLCLAGCNSVTNKSLQALKKMDSLQGLNIKNCKSLSSRTVDKLIDHLWMCDILF* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0639 636 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 627 - -
Tpr7g0639 636 SMART LRR_CC_2 446 471 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 260 285 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 552 576 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 340 365 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 526 551 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 234 259 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 472 497 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 392 417 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 499 524 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 366 391 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 182 207 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 208 233 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 603 628 IPR006553 -
Tpr7g0639 636 SMART LRR_CC_2 578 602 IPR006553 -
Tpr7g0639 636 Pfam F-box domain 71 107 IPR001810 GO:0005515
Tpr7g0639 636 SUPERFAMILY RNI-like 175 282 - -
Tpr7g0639 636 Gene3D Ribonuclease Inhibitor 61 286 IPR032675 -
Tpr7g0639 636 Gene3D Ribonuclease Inhibitor 287 439 IPR032675 -
Tpr7g0639 636 Gene3D Ribonuclease Inhibitor 440 634 IPR032675 -
Tpr7g0639 636 PANTHER UNCHARACTERIZED 16 627 - -
Tpr7g0639 636 SUPERFAMILY F-box domain 58 109 IPR036047 GO:0005515
Tpr7g0639 636 SUPERFAMILY RNI-like 326 632 - -
Tpr7g0639 636 SMART fbox_2 71 112 IPR001810 GO:0005515
Tpr7g0639 636 Pfam Leucine Rich repeat 552 574 IPR001611 GO:0005515
Tpr7g0639 636 Pfam Leucine Rich repeat 341 362 IPR001611 GO:0005515
Tpr7g0639 636 Pfam Leucine Rich repeat 525 549 IPR001611 GO:0005515
Tpr7g0639 636 Pfam Leucine Rich repeat 233 256 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0639 Tpr-Chr7 5652584 5656451 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0639 K14515 - gmx:100805418 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0639 7 5652584 5656451 Tpr7g0639 7 5652584 5656451 ECH
Tpr1g3397 1 38301556 38305553 Tpr7g0639 7 5652584 5656451 PCT