Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3397 ATGTCTCAAGTCTTCGGCTTTTCTGGTGATAACTTTTGCCATGGGGGTTCAATATACACAAACCCCAAGGAAGCTAGTTTCTTCCAGTCTCTTGGCCACCAAGCTGATGTCTACTATCCTCCTCAGAAGAGATCACGTATCAGCGTTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACCTCTATTGAATCTTTACCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCTGTAGGTGAAGAAAGGAGTGCATGCGCATGTGTTTCCAAACGCTGGCTTATGCTTCTAAGCAATATTTGCAAGAGTGAAATCTGTAACAAAAGTACCAACTCAGATGACAAGAATAAAATGGAAGTTGACAGTGAAGAGTTCGGAGGTGAGGGATATCTTTCCCGGAGCTTAGAAGGAAAGAAGGCAACAGATGTTAGACTTGCTGCAATTGCAGTTGGAACCGCATCACGAGGAGGATTGGGAAAGCTTTCAATCCGTGGAAGCAACTCAGTTCGTGGGGTGACTGCTCTAGGTCTCAAAGCAGTTGCTAGTGGATGCCCTTCTCTAAAGGCTCTTTCTCTATGGAATGTTTCTTCTGTTGGTGATGAAGGCATAATCGAGATCGCTAATGGATGTCAACAGCTAGAGAAGCTTGACCTCTGCAAATGCCCTGCAATCTCTGACAAGGCTTTAATCGCAGTTGCAAAGAAGTGTCCAAATCTGACCGAGTTATCATTAGAGTCTTGTCCTAGCATTTGCAATGAAGGTCTACAAGCTATTGGAAAGTTCTGCCCTAATCTGAAATCTATATCTATCAAGGACTGTGCCGGTGTTGGTGATCAGGGAATTGCTGGCCTGTTTTCTTCAGCTTCTTTGGTTCTGACGAAAGTGAAGCTCCAGGCTTTGACTGTTTCTGATCTTTCTTTGGCTGTTATTGGACATTATGGAAAATCAGTTACCGATCTTGTCCTTAATTTCCTTCCAAATGTTAGTGAAAGGGGCTTCTGGGTTATGGCCAACGCTAATGGATTGCATAAATTGAAGTCACTCACAATTGCATCCTGCAGAGGAGTAACAGATGTTGGACTTGCAGCTGTTGGAAAGGGTTGCCCTAATTTGAAAAGCGTACACCTTAATAAGTGTGCGTTTCTCTCAGACAATGGATTGATTTCATTCACCAAGGAAGCTATATCACTTGAAAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAATTCGGGTTTTTCGGTGTCCTTTTTAACCGTGGTGCTAAATTGAAGGCTCTTTCACTTGTAAGCTGCTATGGGATCAAAGACTTGGACTTGGAATTTTCTCCGGTAGCTCCTTGTGAATCACTCCGTTCATTGACAATCTGTAACTGCCCTGGATTTGGCAACGCTACCCTTTCTGTACTCGGAAAGTTGTGCCCTCAGCTTCAACAGGTTGAATTGACTGGACTTAAGGGAGTGACAGATGCTGGTTTGCTTCCACTGCTTGAGAGCTCCAAGGTTGGTCTCGTTAAAGTTAATCTTAATGGTTGTATCAATCTTACCGACAAAGTAGTTTCATCCCTGGTCAATCTACATGGTTGGACTCTTGAGGTTCTAAACCTTGAAGGTTGTAAAAATATCAGCAACGCTAGCTTGGTAGCAATTGCTGAACACTGCCAATTGCTTTGTGATCTTGATGTTTCCATGTGTACAATCTCTGATGCTGGGATGGCAGCCCTGGCACATGCAAAACAGTTAAATCTACAGATTCTTTCTCTGTCAGGCTGCACTTTGATTACGGACAGGAGTTTGCCCGCTTTGAGGAAATTGGGCCACACCCTTTTGGGACTAAATATCCAGCATTGCAATTCGATTAGCAGCAGCGCAGTTGAAATGCTTGTTGAACATCTTTGGAGGTGTGACATCCTCTCATGA 1932 0.4369 MSQVFGFSGDNFCHGGSIYTNPKEASFFQSLGHQADVYYPPQKRSRISVPFVFDGEWFEQKQKTSIESLPDECLFEIFRRLPVGEERSACACVSKRWLMLLSNICKSEICNKSTNSDDKNKMEVDSEEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNSVRGVTALGLKAVASGCPSLKALSLWNVSSVGDEGIIEIANGCQQLEKLDLCKCPAISDKALIAVAKKCPNLTELSLESCPSICNEGLQAIGKFCPNLKSISIKDCAGVGDQGIAGLFSSASLVLTKVKLQALTVSDLSLAVIGHYGKSVTDLVLNFLPNVSERGFWVMANANGLHKLKSLTIASCRGVTDVGLAAVGKGCPNLKSVHLNKCAFLSDNGLISFTKEAISLESLQLEECHRITQFGFFGVLFNRGAKLKALSLVSCYGIKDLDLEFSPVAPCESLRSLTICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDAGLLPLLESSKVGLVKVNLNGCINLTDKVVSSLVNLHGWTLEVLNLEGCKNISNASLVAIAEHCQLLCDLDVSMCTISDAGMAALAHAKQLNLQILSLSGCTLITDRSLPALRKLGHTLLGLNIQHCNSISSSAVEMLVEHLWRCDILS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3397 643 PANTHER EIN3-BINDING F-BOX PROTEIN 1 16 634 - -
Tpr1g3397 643 Gene3D Ribonuclease Inhibitor 505 642 IPR032675 -
Tpr1g3397 643 Gene3D Ribonuclease Inhibitor 59 292 IPR032675 -
Tpr1g3397 643 Gene3D Ribonuclease Inhibitor 293 445 IPR032675 -
Tpr1g3397 643 SMART LRR_CC_2 188 213 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 240 265 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 372 397 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 266 291 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 584 609 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 478 503 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 505 530 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 398 423 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 452 477 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 346 371 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 532 557 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 558 582 IPR006553 -
Tpr1g3397 643 SMART LRR_CC_2 214 239 IPR006553 -
Tpr1g3397 643 Pfam F-box domain 67 104 IPR001810 GO:0005515
Tpr1g3397 643 SUPERFAMILY F-box domain 62 103 IPR036047 GO:0005515
Tpr1g3397 643 SMART fbox_2 69 110 IPR001810 GO:0005515
Tpr1g3397 643 SUPERFAMILY RNI-like 169 640 - -
Tpr1g3397 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Tpr1g3397 643 Pfam Leucine Rich repeat 372 393 IPR001611 GO:0005515
Tpr1g3397 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Tpr1g3397 643 Gene3D Ribonuclease Inhibitor 446 504 IPR032675 -
Tpr1g3397 643 PANTHER UNCHARACTERIZED 16 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3397 Tpr-Chr1 38301556 38305553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3397 K14515 - gmx:100820247 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3397 1 38301556 38305553 Tpr1g3397 1 38301556 38305553 ECH
Tpr1g3397 1 38301556 38305553 Tpr7g0639 7 5652584 5656451 PCT