Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3604 ATGAATTTCTTCAAATCCGTTTTCTCCGACGACTCGGACCCTCCAGGATCCGAATCCAACAACGCTTCCTCCACCGACTCCCCAAACGCGCCACCTTCCGATTCCTCTCCGTCACACCACCACCGTAATCCTTCCGCCTCATGGAAGAATCTAATCAAAACCCTAAGCGAAAAATCCGAATCCGTAATCGAAATTTACCGTCGCGATCTTCAAGAATTCGGTACTGGATTGAAGAAAGAGATAGAAGTTGCACATGACTCTCTTGAAACGGTTGGACACGTCATCGATCAATTCGGAAATACCGTTATCAAAGGAACGGCTCAGATTATATCTCAAGGAAAAGAAGCAATTCTTGAATCTGATTCTGTTCAGAAGAAGAATAAGAAACAGAGTAATTTGAATTCGAAGAAGTATAGTAGATTTGATGCACAAATTCGTGCAATTCAGGGTGATGTTAATACTTACATTGAAGAACCTTTTGATTTGGAGCGTTATAATAAGTGGAAATTGGAGTTTTCTTTGGAAGGAAAAAATGAAGAGATTGAAGGGTTGTTAAAAGAGAATGATGAAATGGATAGTGTTTATAAAAGAGTTGTTCCTAATAATGTTGATAGGGAAACTTTTTGGTTAAGGTATTATTATAAGGTTTATAAGGTTAAGAAAGCTGAGGATATTAGGGCTAAGCTTGTGAGACGAATGTCGAAGGAAGAGGACGAAGATTTGAGTTGGGATGTTGAAGATCAGGAGTATATTGATGATGATGATGATGACGTAGATGAGGAAGATGAGTCTAAGGTTGAAAAGAGAGATAGTTTATTGCAAAACAAAATGGTGGAGGAATCAAAAGTTGATGAGAATTTGGAGGGTGTTCAAGAGAAGGGTGATGGAAGTAAAGTGGATAATGTTAATGATTCTGAAGTGGATTCTGATAAGAAAATGACAATGGAGAGGAATGCCAGCGATGGAAAGTCTATACCGGAAGAAAGTCGGGAGGAGAAGGAGAAGGAGAAGGAGGAGGAGAAGGAGCTTGAGTGGGATGAGATTGAGGATCTTAGTAGCATTCATGAAAAGAAGGCAATGGGGGAGAGCGGTAGCGCAAGCAAAGTTGATTTGCTGAAGCGCTTGAGTTCTGCGGCCGAAGAAGAAGATTTGAGTTGGGATATTGAAGATGATGATGAGCCTGCCAAGGCTTGA 1194 0.4062 MNFFKSVFSDDSDPPGSESNNASSTDSPNAPPSDSSPSHHHRNPSASWKNLIKTLSEKSESVIEIYRRDLQEFGTGLKKEIEVAHDSLETVGHVIDQFGNTVIKGTAQIISQGKEAILESDSVQKKNKKQSNLNSKKYSRFDAQIRAIQGDVNTYIEEPFDLERYNKWKLEFSLEGKNEEIEGLLKENDEMDSVYKRVVPNNVDRETFWLRYYYKVYKVKKAEDIRAKLVRRMSKEEDEDLSWDVEDQEYIDDDDDDVDEEDESKVEKRDSLLQNKMVEESKVDENLEGVQEKGDGSKVDNVNDSEVDSDKKMTMERNASDGKSIPEESREEKEKEKEEEKELEWDEIEDLSSIHEKKAMGESGSASKVDLLKRLSSAAEEEDLSWDIEDDDEPAKA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3604 397 SMART wurzfinal6 168 220 IPR005607 -
Tpr6g3604 397 Coils Coil 174 194 - -
Tpr6g3604 397 MobiDBLite consensus disorder prediction 1 47 - -
Tpr6g3604 397 MobiDBLite consensus disorder prediction 241 397 - -
Tpr6g3604 397 Gene3D BSD domain 130 230 IPR035925 -
Tpr6g3604 397 PANTHER PROTEIN, PUTATIVE-RELATED 1 83 - -
Tpr6g3604 397 PANTHER PROTEIN, PUTATIVE-RELATED 83 391 - -
Tpr6g3604 397 PANTHER SYNAPSE-ASSOCIATED PROTEIN 83 391 - -
Tpr6g3604 397 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 83 - -
Tpr6g3604 397 Coils Coil 219 239 - -
Tpr6g3604 397 MobiDBLite consensus disorder prediction 264 340 - -
Tpr6g3604 397 MobiDBLite consensus disorder prediction 348 363 - -
Tpr6g3604 397 Pfam BSD domain 168 224 IPR005607 -
Tpr6g3604 397 SUPERFAMILY BSD domain-like 138 225 IPR035925 -
Tpr6g3604 397 MobiDBLite consensus disorder prediction 241 263 - -
Tpr6g3604 397 ProSiteProfiles BSD domain profile. 168 220 IPR005607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3604 Tpr-Chr6 39116081 39117741 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3604 - - mtr:MTR_7g094240 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3604 6 39116081 39117741 Tpr6g3604 6 39116081 39117741 ECH
Tpr6g3604 6 39116081 39117741 Tpr1g1224 1 10947956 10949625 PCT