Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3603 ATGGCGGCTATCCAAGAATCACGGACGGATCAACCAAAAACAACACCGCCGTTTCAACCACCGCCGCCGTTACTCGTTTCTGATTCTTACGCTAAAGACGCTATTCTTGCATGGTTTCACGGCGAGTTTGCCGCTGCTAACGCAATCATTGACTCTCTCTGCGGTCATCTTGCGCAAGTTGCTTCGTCGTCGAACGATTATGATTTGGCGTTTGCTGCTATTCATCGGCGGCGTCTTAACTGGATCCCTGTTATTCAGATGCAGAAGTATCACTCCATTGCTGATGTCACTCTTGAACTGCGTAAGGTCGCTGAGAAGAAAACTGAATCGGTTGATGGAGCGATGAAAACTGTAGAGAGTGATGGTTTTGATGAGAAAGTGGTGGAAAGTGTCGGGAATGGTGGCGATGACGCGACGGCGGAGGTGACGGTGGAATATGATTCGCCGGACAGTGAGATCACTGATTCAGGATCGCAGGAAATTCAACACAGTTTCACTAACAATAGTATATGTTCAAATCATGAAGAATGTGAAGGACGTTCTTCACAGATAAAGTTGACAAAAGGTTTCACAACAAAGGAGATCCTGAAAGGGCATCTGGTGAATGCTGTGAAAGGGTTGAGGTTGTATGAAGACATTTTTTCTGAATCACAACTCTGCAAGCTGAATGATTTTGTGAAAGAGATCCATGCTGCTGGCCAGAATGGGGAACTTTCAGGTGAAACCTTCATACTATTTAACAAACAGGTGAAGGGGAACAAGAGAGAGCTGATTCAGTTAGGTGTTCCCATATTTGGACAGATAAAAGACAATGCAAAACGTATTGAGCCAATTCCATCACTTCTACATGGTGTCATTGATCACCTTATTCAGTGGGATTTGATTCCAGAGTACAAAAGGCCAAATGGTTGCATCATCAACTTCTTTGAAGAGGGGGAGTTTTCTCAGCCATTCATGAAACCTCCGCATTTGGATCAACCTCTATCTACCCTTCTTCTCTCTGAATCTACAATGGCTTTTGGGCGTATTCTTATGAGTGAAGATGATGGGAATTACAAAGGTCCACTTACGCTCTCTTTGAAGCAAGGGTCTCTTTTAGTGATGAGAGGAAACAGCGCTGACATGGCAAAGCATGTGATGTGTCCATCTCCTAACAAAAGGGTGAGCATCACCTTCTTTAGAGGTAGAGAAGACTCCTATCAAGGCCAATCAACAAATCCTCCAACGACGAAATCTGCGATGACTCTCTGGCAACCCGACACTGCCAGTCCATTTGCTTTGCCAAATGGAGCACTAAGTGGCAATGAGGCTATGGATATGATGCCCCCATGGGGAATTCTTGGTGCTCCGATGGTCATGCTAACCCCTATGCACCCTATGACAATGAATCCCAGCAAACTTCCTTGCGGAGGGACCGGAGTTTTCTTTCCTTGTTGGAAGGGGCAACCCAGAAAACAGCCAAGGTATCTTCCACCGCGTGCCCACAAAGGACGAGTTATGGCATTACCTTCCCCTGTTAAGTCACACACAGAAGACTCTACTTCTGAACCCACCATTACTGTTGAATGA 1569 0.457 MAAIQESRTDQPKTTPPFQPPPPLLVSDSYAKDAILAWFHGEFAAANAIIDSLCGHLAQVASSSNDYDLAFAAIHRRRLNWIPVIQMQKYHSIADVTLELRKVAEKKTESVDGAMKTVESDGFDEKVVESVGNGGDDATAEVTVEYDSPDSEITDSGSQEIQHSFTNNSICSNHEECEGRSSQIKLTKGFTTKEILKGHLVNAVKGLRLYEDIFSESQLCKLNDFVKEIHAAGQNGELSGETFILFNKQVKGNKRELIQLGVPIFGQIKDNAKRIEPIPSLLHGVIDHLIQWDLIPEYKRPNGCIINFFEEGEFSQPFMKPPHLDQPLSTLLLSESTMAFGRILMSEDDGNYKGPLTLSLKQGSLLVMRGNSADMAKHVMCPSPNKRVSITFFRGREDSYQGQSTNPPTTKSAMTLWQPDTASPFALPNGALSGNEAMDMMPPWGILGAPMVMLTPMHPMTMNPSKLPCGGTGVFFPCWKGQPRKQPRYLPPRAHKGRVMALPSPVKSHTEDSTSEPTITVE* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3603 522 Pfam 2OG-Fe(II) oxygenase superfamily 306 394 IPR044861 -
Tpr6g3603 522 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 4 521 IPR044842 GO:0003729|GO:0006402|GO:0032451
Tpr6g3603 522 MobiDBLite consensus disorder prediction 487 522 - -
Tpr6g3603 522 Gene3D - 190 401 IPR037151 -
Tpr6g3603 522 SUPERFAMILY Clavaminate synthase-like 196 392 - -
Tpr6g3603 522 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 300 396 IPR005123 -
Tpr6g3603 522 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 4 521 - -
Tpr6g3603 522 MobiDBLite consensus disorder prediction 1 23 - -
Tpr6g3603 522 MobiDBLite consensus disorder prediction 507 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3603 Tpr-Chr6 39109572 39115705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3603 K10767 - gmx:100776159 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3603 6 39109572 39115705 Tpr6g3603 6 39109572 39115705 ECH
Tpr6g3603 6 39109572 39115705 Tpr1g1223 1 10941168 10946340 PCT