Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1223 ATGGCGGCTGGTCCAGCATCAACCACCACCACCGCAACCACTACCGATCGACCTTCCATGCCACCAACAACAACAACCGTTCCTCTTCAACCACCACCACCAATGCTCGTATCTGATTCATTCGCTAAAGATGCTATTCTCGCTTGGTTTCGTGGCGAGTTTGCTGCTGCTAATGCTATCATCGATGCTCTTTGTTCTCATCTCTCTCATCTTTCTTCATCCGCTGATTATACCAATGTTTTCGCCGCTATTCATCGTCGTAGACTCCATTGGATCCAAATCCTTCAGATGCAAAAGTATCACTCCATTGCTGATGTCGCTCTTCAGCTTCGTATAGTCGCTGAAAACAACAAAACTGCGATTCAAGAAGAACAAGAACAATATGTCATTGAAAATGATGTCGTCGTTGCCGAGGAGGAGGAGCCGGAGCCGGAGGTGGAACAACAGAAAGTCATCAATGGTGGTGGTGGTGATGAACACGAGGAGTATGATTCACCCGAGAGTGAGATCACTGATTCAGGATCTCAAGAAAACCAGACTAGTTCAATGAACATTGATATATGTTCCAATCATGAAGAATGTGAAGAACGTCCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAAGAGTCAGTGAAGGGGCACATGGTGAATGTTGTGAAAGGGTTGAAATTATATGAAGATGTTTTCACTGATTCAGAATTGTGCAAGCTGTCAGATTTTGTCAATGAGATCCATACTGCTGGCCAGAATGGGGAACTGTCTGGTAAACCACTGTTGAACTTTGTGTGTGTCGGGATAAAGACAAATTATATAGCAAGACCATCTATGGCAGCTCCAATGTATTTGTGCGGTTATACAACGAATCAAATATTTCTTACATTACTATCTTCTTGCATACTTGTAGGTGAAACTTTTATATTATTCAACAAACAGATAAAGGGTAACAAGAGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGACAGATAAAGGAGGACACAAAAAGTAATATAGAGCCAATTCCAGCAATTCTGCAACGTGTCATCGATCACTTTATTCAATGGCATTTACTTCCAGAGTACAAAAGACCAAATGGTTGTATCATCAACTTTTTTGAAGAGGGGGAGTTTTCTCAGCCATTCCTGAAACCACCGCATCTGGATCAACCTGTGACCACTCTTCTTCTCTCTGAATCAACCATGGCTTTTGGGCGTATCCTTGTGAGTGAAAACGATGGGAACTACAAGGGACCACTCATGCTCTCATTGAAGCAGGGGTCTCTCGTGGTGATGAGAGGAAACAGTGCTGACATGGCAAGGCACGTCATGTGTCCATCTCCAAACAGAAGGGTGAGCATCACCTTCTTTAGAGTGAGGCCAGACTCCAATCAATGCCAATCACCAACTCCTACCATGACAAATTCAATGACTCTCTGGCAACCTGCCATTGCTAATCCGTATGCTTTGCCAAATGGAACTATAAGTTGCGGCTATGACGGTATGGACATGATGATGCCCAAATGGGGAATGCTTCCTGGCCCGATGATGATGCTGACACCTATGCGTCCTATGGCATTGAATCCCCGTAAACTTGCTGGTGGTGGTACTGGAGTCTTCTTGCCATGGAATGTCCCATCCAGAAAACCTGCAAAGCATCTTCCACCACGTGCACAGAAAGGAAGGCTTCTAGCATTGCCTTCTCCTGTTGAGCCACACATTGGAGAGTCCACTTCTGAACCCAGCATTTGTGTCGAAGGATGA 1767 0.4448 MAAGPASTTTTATTTDRPSMPPTTTTVPLQPPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCSHLSHLSSSADYTNVFAAIHRRRLHWIQILQMQKYHSIADVALQLRIVAENNKTAIQEEQEQYVIENDVVVAEEEEPEPEVEQQKVINGGGGDEHEEYDSPESEITDSGSQENQTSSMNIDICSNHEECEERPSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDVFTDSELCKLSDFVNEIHTAGQNGELSGKPLLNFVCVGIKTNYIARPSMAAPMYLCGYTTNQIFLTLLSSCILVGETFILFNKQIKGNKRELIQLGVPIFGQIKEDTKSNIEPIPAILQRVIDHFIQWHLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVTTLLLSESTMAFGRILVSENDGNYKGPLMLSLKQGSLVVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPTMTNSMTLWQPAIANPYALPNGTISCGYDGMDMMMPKWGMLPGPMMMLTPMRPMALNPRKLAGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLALPSPVEPHIGESTSEPSICVEG* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1223 588 MobiDBLite consensus disorder prediction 138 181 - -
Tpr1g1223 588 Gene3D - 207 469 IPR037151 -
Tpr1g1223 588 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 29 263 IPR044842 GO:0003729|GO:0006402|GO:0032451
Tpr1g1223 588 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 302 586 IPR044842 GO:0003729|GO:0006402|GO:0032451
Tpr1g1223 588 MobiDBLite consensus disorder prediction 1 32 - -
Tpr1g1223 588 MobiDBLite consensus disorder prediction 1 23 - -
Tpr1g1223 588 SUPERFAMILY Clavaminate synthase-like 336 461 - -
Tpr1g1223 588 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 365 462 IPR005123 -
Tpr1g1223 588 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 302 586 - -
Tpr1g1223 588 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 29 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1223 Tpr-Chr1 10941168 10946340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1223 K10767 - gmx:100791586 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1223 1 10941168 10946340 Tpr1g1223 1 10941168 10946340 ECH
Tpr6g3603 6 39109572 39115705 Tpr1g1223 1 10941168 10946340 PCT