Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3566 ATGACAAAGACCGTACCCGCTAAAAATGGAGTTCGAGTCGTCGTCGCCGGTGATCGAGGCACCGGAAAATCAAGCCTCATAGCTGCTATAGCATCAGATTCATTCCCCGATTCCGTTCTTCCCGTCCTTCCCCCCACTATCTTGCCCGCTGATTTTTTCCCCGACTACGTTCCCCTTACCATCATCGACACATCCTCTAGCTTGGAGAAAAAAAATAAGCGTAATGAAGAACTGATAGGTGCTGATGTTGTGGTTTTAACATATGCTTGCAATGATTCTCAGTCGTTTTCGCGGTTGAGTTCTTATTGGTTTCGGGAACTGCAGAAGTTGGAGGTAACAGTACCTGTAATTGTGGTTGGTTGCAAGCTCGATCTGCGAGACGAAAGCCAACAAGTGAGCTTAGAACGTCTCATGGCACAACTTCTACAAGAGTTCAAGAATGTTTCCATCTGCATTGAATGCTCTGCAGCGACACTATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCTGTACTACATCCAGTAGATCCATTGTTTGATCATGAAAGTCAAGCTTTAACAGATCAATGTGTTAGGGCGTTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGATGCCCTCAATGATGCAGAACTAAATGATTTTCAGGTTAAATGTTTCAATACACCATTGCAGTCATCTGAAATAGCCGAGGTCAAAACAGTTGTAGAGCAGAAAGTACCGGAAGGAATCAATTCGCATGGTCTTACTTTTCCAGGATTTATGTATATACATAATATGTTCTTAAGAAAAGGGCATCCGGAGACATTATGGGCTGTGTTAAGAAACTTTGGATATGATAATAATTTAAAACTCAAGGATGATTTCCTTCCTGTTCCATCTAAGATTGCTCCTGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAATTTCTAAATGGCATATTCCGGCTATTGGATACTGATAAAGATCGAGCCCTAAGACCTGCTGAAGTGGACAAGCTCTTTTGTACTGCTCCGGAAAGTCCATGGAATGATGCTCCATATAACGAGGCTGCTGAGAGATCTGATATGGGTTACCTATCTCTTAACGGATTTCTATCCCAGTGGGCCCTTATGACATTACTTGATCCACCATGTAGCTTGGCGAATTTGATTTACATTGGATTTAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGGAGATCAGTTGATCGCAAGAGACAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAATCTGCTCTGTTGGAAGCATTATTGGGAAGGCCTTTCTCAAATAATTATACTCCAACAACAGCCGAGAAGTTTGCTGCAAATGCCATTGACTTAATAGGGGGAACTAGGAAAACTCTTGTATTACGGGAGATACCTGAGAGTGAAGTATCGAAAGTTCTGGCAAAGCAGGATTATTTAGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAGGAAATCACGAGATTTGCTTGAGAAGGTTGCTGGACAAGGTGATCTAACTGGTTATAGAGTTCCTTGCCTCCTCATTGCTGCTAAGGATGATCTAACTCCATATCCAAGGGCTGTCCAAGATTCAGTCAAGGCTACTCAGGAGTTGGGAATAGAGGCACCTATTCACGTAAGTATGAAATTAGGCGATTCAAGTAATGTGTATAATAAAATTGTTAGTGCTGCAGAGCACCCTCACTTGAGCATTCCAGAAACTGAGATTGGGAAAAAGAGAAAGCAATACAATCGGCTTGTTCAGAACTCTCTTATTTTTGCTTCAGTTGGGACCGCTATGGCAGTTGTTGGTTTGGCAGCATGCCGTGCTTATGCAGTGCGGAAGAATTCTTCTGCTTAG 1926 0.4242 MTKTVPAKNGVRVVVAGDRGTGKSSLIAAIASDSFPDSVLPVLPPTILPADFFPDYVPLTIIDTSSSLEKKNKRNEELIGADVVVLTYACNDSQSFSRLSSYWFRELQKLEVTVPVIVVGCKLDLRDESQQVSLERLMAQLLQEFKNVSICIECSAATLYQVPEVFYFAQKAVLHPVDPLFDHESQALTDQCVRALRRIFVLCDRDMDDALNDAELNDFQVKCFNTPLQSSEIAEVKTVVEQKVPEGINSHGLTFPGFMYIHNMFLRKGHPETLWAVLRNFGYDNNLKLKDDFLPVPSKIAPDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWNDAPYNEAAERSDMGYLSLNGFLSQWALMTLLDPPCSLANLIYIGFSGNPAAALRVTRRRSVDRKRQATERNVFQCYVFGSKNAGKSALLEALLGRPFSNNYTPTTAEKFAANAIDLIGGTRKTLVLREIPESEVSKVLAKQDYLAACDVAVFVYDSSDEYSWRKSRDLLEKVAGQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKATQELGIEAPIHVSMKLGDSSNVYNKIVSAAEHPHLSIPETEIGKKRKQYNRLVQNSLIFASVGTAMAVVGLAACRAYAVRKNSSA* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3566 641 ProSiteProfiles Miro domain profile. 419 588 IPR020860 GO:0003924|GO:0005525
Tpr6g3566 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 592 IPR027417 -
Tpr6g3566 641 SMART ras_sub_4 8 176 - -
Tpr6g3566 641 Gene3D - 289 479 - -
Tpr6g3566 641 ProSiteProfiles small GTPase Rab1 family profile. 6 203 - -
Tpr6g3566 641 SMART rab_sub_5 11 176 - -
Tpr6g3566 641 SUPERFAMILY EF-hand 180 375 IPR011992 -
Tpr6g3566 641 PIRSF Miro 7 641 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Tpr6g3566 641 Gene3D - 8 178 IPR027417 -
Tpr6g3566 641 Pfam EF hand associated 226 310 IPR013567 -
Tpr6g3566 641 Gene3D - 183 287 - -
Tpr6g3566 641 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Tpr6g3566 641 Gene3D - 485 586 IPR027417 -
Tpr6g3566 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 208 IPR027417 -
Tpr6g3566 641 PANTHER RHO FAMILY GTPASE 8 492 IPR003578 GO:0005525|GO:0007264
Tpr6g3566 641 Pfam EF hand associated 348 415 IPR013566 -
Tpr6g3566 641 PRINTS Transforming protein P21 ras signature 11 32 - -
Tpr6g3566 641 PRINTS Transforming protein P21 ras signature 112 125 - -
Tpr6g3566 641 PRINTS Transforming protein P21 ras signature 151 173 - -
Tpr6g3566 641 ProSiteProfiles Miro domain profile. 8 175 IPR020860 GO:0003924|GO:0005525
Tpr6g3566 641 CDD Miro2 418 600 - -
Tpr6g3566 641 SMART rho_sub_3 13 176 IPR001806 GO:0003924|GO:0005525
Tpr6g3566 641 PANTHER MITOCHONDRIAL RHO GTPASE 8 492 - -
Tpr6g3566 641 Pfam Ras family 12 173 IPR001806 GO:0003924|GO:0005525
Tpr6g3566 641 Pfam Ras family 426 551 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3566 Tpr-Chr6 38730147 38742737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3566 7 639 EF-hand Containing Proteins AT3G63150 58.768 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3566 K07870 - gmx:100803790 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3566 6 38730147 38742737 Tpr1g2010 1 20572991 20579733 PCT