Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2010 ATGGCGTATTTTCCCAAGGTAGTTAGAATCGTCGTCGTTGGCGACAAATCCACCGGAAAATCCACTCTCATTTCTGCCATGGCTTCCGATTCATTCCCCGCCACTGTTCCTCCATTACTTCCACCCACTCGTTTGCCTAGTAATTCCTTCAATGATTCTGTTCCTCTCCTCCTCATTGACACACCTTCAAGTGTGGGACAACAAGGTAAAGTTATTGAAGAATTGAAGCGTGCTGATTCAGTTGTTGTAACCTATGCTTGTGATGATAGTCTGAGTTTTGAGCGTGTGAGTACTCATTGGTTGCCTCAACTGCAGAAGTTTGAGGTGAAGGTACCGGTGCTTGTGGTTGGTTGTAAGTTTGATCTTCGCGATGAAAGTAGGCAAGTTAGCTTAGAGAGTCTGACAACAAGTATCATGAACCAATTCAAAGAAGTTGTTACATGTATTGAATGCTCTGCAGCTACACTTTATCAGGTCCCTGAAGTTTTTTATTTTGCACAAAAAGCAGTACTTCATCCGGTGGATCCTTTGTTTGATTATGATACAAACTCTTTAACAGATCGGTGTGTAAGGGCATTAAGAAGAATTTTTAATCTTTTTGATTACAACATGGATGGCACCCTCACTGATCAAGAAGTAAACGAGTTTCAGATTAGCAGCTTCGGTGCATCATTGCAGCGGTCTGACGTAACTCAAATAAAAACATTGGTAGAGCAGAATGTTCCTGAAGGAGTCAATTCTCTTGGTATTACTTTTCCTGGCTTCATTGGAATCCATAATATGTTTCTAAAGAAAGGGCGAACGGAGACATTCTGGGCAGTTCTAAGAAAGTTTGGATATGGTGACGATTTAAAACTGCGCGATGATTTTCTTCCAGTTCCATCTAAGCAGGCTTCTGATCAGAGTGTGGAGCTGAGTGGTGCAACCATAGAGTTTTTGAAGGGTGTCTTTAGATTGTTAGATACGGATAAGGATCAATTACTACGACCTGCAGAAGTTGATAAGCTATTTGATGCTGCTCCAGAAAGTCCGTGGAAGGATGCTCCATATAAGGATGCAGCTGAGACAACTGACATGGGTTATATATCTCTAAATGGATTTCTTTCTCAGTGGGCCCTTATGACATCACTGGATCCAAGATATAGTTTGGCCAATTTAATTTACATCGGTTATAGAGCTAAGCCTTCTGCAGCACTCCGTGTCACTTGTAGAAGATCAGAAGATCGCAAAAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTACATTTTTGGCTCTAAAAATGCTGGGAAATCTGCTTTGTTGTATTCATTATTGGGAAGGTCTTTCTCAAATAACTATACTCCAACAACTGTTGAGCGGTATGCAGCAAACATCATTGAATTAATAGAGGGAACTAAGAAAACTCTCATATTGCGTGAGATTCCGGAGGATGAAGTATCGGCTTTTTTGTCAAATAAGGATTTTCTGGCTGCATGTGATATAGCTGCTTTTGTACATGACAGTTCAGATGGATATTCATGGAAAAAATCCATAGATTTGCTTGAGAAGGTTGTTAACCAAGGAGAGCTAACTGGTCACAAATTTCCTTGCCTCCTCATTGCTGCTAAGGATGATTTAACTCCATTCCCAAGGGCAGTACTAGATTCAGTTAAGGTTGCTCAGGAATTGAAAATTGATGCTCCTATTCGCGTGAGTATGAAATCAGGTGATTCAAACGTGTATGTTAAGATTATCAATGCTGCAGAACACCCTCATTTGAGTATTCCAGAAACTGAGTTTATGAGGAAAAGAAAGCAACACCAGCAGCTTCTTCACACATTTATCTTTGCCCTAGCTGGGGCTGCTATGGCACTTGTGGGTTTGACGGCCCGTCGTGCACGTGCGAATAAGAATTCTTCTTCTTAG 1908 0.4099 MAYFPKVVRIVVVGDKSTGKSTLISAMASDSFPATVPPLLPPTRLPSNSFNDSVPLLLIDTPSSVGQQGKVIEELKRADSVVVTYACDDSLSFERVSTHWLPQLQKFEVKVPVLVVGCKFDLRDESRQVSLESLTTSIMNQFKEVVTCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDYDTNSLTDRCVRALRRIFNLFDYNMDGTLTDQEVNEFQISSFGASLQRSDVTQIKTLVEQNVPEGVNSLGITFPGFIGIHNMFLKKGRTETFWAVLRKFGYGDDLKLRDDFLPVPSKQASDQSVELSGATIEFLKGVFRLLDTDKDQLLRPAEVDKLFDAAPESPWKDAPYKDAAETTDMGYISLNGFLSQWALMTSLDPRYSLANLIYIGYRAKPSAALRVTCRRSEDRKKQKTERNVFQCYIFGSKNAGKSALLYSLLGRSFSNNYTPTTVERYAANIIELIEGTKKTLILREIPEDEVSAFLSNKDFLAACDIAAFVHDSSDGYSWKKSIDLLEKVVNQGELTGHKFPCLLIAAKDDLTPFPRAVLDSVKVAQELKIDAPIRVSMKSGDSNVYVKIINAAEHPHLSIPETEFMRKRKQHQQLLHTFIFALAGAAMALVGLTARRARANKNSSS* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2010 635 SMART rho_sub_3 10 173 IPR001806 GO:0003924|GO:0005525
Tpr1g2010 635 ProSiteProfiles EF-hand calcium-binding domain profile. 308 343 IPR002048 GO:0005509
Tpr1g2010 635 Gene3D - 5 175 IPR027417 -
Tpr1g2010 635 PRINTS Transforming protein P21 ras signature 8 29 - -
Tpr1g2010 635 PRINTS Transforming protein P21 ras signature 109 122 - -
Tpr1g2010 635 PRINTS Transforming protein P21 ras signature 148 170 - -
Tpr1g2010 635 PANTHER RHO FAMILY GTPASE 6 484 IPR003578 GO:0005525|GO:0007264
Tpr1g2010 635 Gene3D - 483 582 IPR027417 -
Tpr1g2010 635 PIRSF Miro 4 635 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Tpr1g2010 635 ProSiteProfiles Miro domain profile. 416 584 IPR020860 GO:0003924|GO:0005525
Tpr1g2010 635 SUPERFAMILY EF-hand 182 374 IPR011992 -
Tpr1g2010 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 588 IPR027417 -
Tpr1g2010 635 SMART rab_sub_5 8 173 - -
Tpr1g2010 635 Pfam EF hand associated 345 412 IPR013566 -
Tpr1g2010 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 203 IPR027417 -
Tpr1g2010 635 SMART ras_sub_4 5 173 - -
Tpr1g2010 635 ProSitePatterns EF-hand calcium-binding domain. 201 213 IPR018247 -
Tpr1g2010 635 ProSiteProfiles Miro domain profile. 5 172 IPR020860 GO:0003924|GO:0005525
Tpr1g2010 635 PANTHER MITOCHONDRIAL RHO GTPASE 6 484 - -
Tpr1g2010 635 CDD Miro2 415 596 - -
Tpr1g2010 635 Pfam Ras family 9 170 IPR001806 GO:0003924|GO:0005525
Tpr1g2010 635 Pfam EF hand associated 224 307 IPR013567 -
Tpr1g2010 635 ProSiteProfiles small GTPase Rab1 family profile. 1 234 - -
Tpr1g2010 635 Gene3D - 286 476 - -
Tpr1g2010 635 Gene3D - 180 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2010 Tpr-Chr1 20572991 20579733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2010 8 633 EF-hand Containing Proteins AT3G63150 53.577 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2010 K07870 - gmx:100806983 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3566 6 38730147 38742737 Tpr1g2010 1 20572991 20579733 PCT