Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3537 ATGGCACAAAGAAACATTGAGATGCTGCTAAGCATGTTCTTTGTTGTAGTGACTCTTTGGGGTGTCACAGTGGCACAAATTGATTCAAGTTGTTCCAATGTGCTCATAAGTCTTTCTCCATGCCTTGACTACATCACAGGACAGACCTCCACCCCTTCATCTGGTTGCTGCTCACAACTTGCCTCGGTGATGGGGTCACAGCCGCAGTGTCTATGTGAGGTTGTTAACGGTGGTGCTTCGTCTATTGCTGCTAGTCTCAACATCAATCAGACTCGTGCTTTAGCACTTCCCACTGCTTGCAATGTCCAAACACCTCTTATCAACACTTGCAGTGGCTCAGCTTCTTCTTCTACTCCTCCAGCAGGTGTTTCTACTTCAAACATTCCAAATTCTCCTTCAGGGGTTTTTTCATCAACTACAGCCGGTGGTGGAACTATCCGTGGCTCATCCTCATCTTATGCAACATCAAGTTCCGCAAAATTACAATGTTCTTTGCTTGTTCTGGTTATCTTTGCAAACTTAACATTCACTTTCATCAGTTTCATGACCACGACTTAG 558 0.448 MAQRNIEMLLSMFFVVVTLWGVTVAQIDSSCSNVLISLSPCLDYITGQTSTPSSGCCSQLASVMGSQPQCLCEVVNGGASSIAASLNINQTRALALPTACNVQTPLINTCSGSASSSTPPAGVSTSNIPNSPSGVFSSTTAGGGTIRGSSSSYATSSSAKLQCSLLVLVIFANLTFTFISFMTTT* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3537 185 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Tpr6g3537 185 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Tpr6g3537 185 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Tpr6g3537 185 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 5 180 IPR043325 -
Tpr6g3537 185 Gene3D - 28 110 IPR036312 -
Tpr6g3537 185 Pfam Probable lipid transfer 23 110 IPR016140 -
Tpr6g3537 185 PANTHER LIPID TRANSFER PROTEIN 5 180 - -
Tpr6g3537 185 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 111 IPR036312 -
Tpr6g3537 185 CDD AAI_LTSS 38 102 - -
Tpr6g3537 185 SMART aai_6 31 110 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3537 Tpr-Chr6 38325660 38327173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3537 10 182 Acyl Lipid Metabolism Gene Families AT2G48130 40.113 3.72e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3537 - - cam:101512493 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3537 6 38325660 38327173 Tpr6g3537 6 38325660 38327173 ECH
Tpr1g2027 1 20814980 20816071 Tpr6g3537 6 38325660 38327173 PCT