Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2027 ATGGCATTTAAAGGGTATGTCCTATGTCTAGTTATGATCCTAGTGGCCAATATGATGACTCAAAATGAAGCCCAATCAAGCTGTACTTCTACACTCACTAACTTGAGCCCTTGTCTAAACTACATAATGGGTAGTTCATCAAACCCATCAGCTTCATGTTGCTCACAACTTTCAACTGTAGTTCAATCTTCTCCACAGTGTCTCTGCTCCTTGCTTAATGGTGGTGGCTCTTCTTTTGGAATTACCATAAATCAAACTCTTGCTCTGTCTCTCCCTTCTGCTTGTAAAGTTCAAACTCCACCTGTTAGTCAGTGCAAAGGTGGAAATGGACCAATATCTCCTTCAAGTTCAAGTTCTCCAGTGGGGTCTCCTGTTGATTCACCAACTGATTCTTCAACTGAATCACCTGAAGGCTCAATAACACCTTCTCCTTCAAACTTTCCCTCAGCAGGAGGAGGTTCAAAAAGTGTCCCATCAACAAACGGTGGCTCATCTGATGGAAGCACCATTAAAGTCTCATTCAACTTTGTTCTTTCTCTTCTTGCCATTGTGTTTTGTGTTGTCACCAAGTTTTAA 576 0.4167 MAFKGYVLCLVMILVANMMTQNEAQSSCTSTLTNLSPCLNYIMGSSSNPSASCCSQLSTVVQSSPQCLCSLLNGGGSSFGITINQTLALSLPSACKVQTPPVSQCKGGNGPISPSSSSSPVGSPVDSPTDSSTESPEGSITPSPSNFPSAGGGSKSVPSTNGGSSDGSTIKVSFNFVLSLLAIVFCVVTKF* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2027 191 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 188 IPR043325 -
Tpr1g2027 191 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 188 - -
Tpr1g2027 191 SMART aai_6 28 105 IPR016140 -
Tpr1g2027 191 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Tpr1g2027 191 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Tpr1g2027 191 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Tpr1g2027 191 Pfam Probable lipid transfer 11 105 IPR016140 -
Tpr1g2027 191 Gene3D - 25 103 IPR036312 -
Tpr1g2027 191 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Tpr1g2027 191 MobiDBLite consensus disorder prediction 106 162 - -
Tpr1g2027 191 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2027 Tpr-Chr1 20814980 20816071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2027 1 188 Lipid Metabolism Gene Families AT3G22600 43.979 1.47e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2027 - - gmx:100306151 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2027 1 20814980 20816071 Tpr6g3537 6 38325660 38327173 PCT