Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3535 ATGAAAGATGACAACTTGAAAAAAACCACCAAGCTTTCATGGACAAAAACATTGGTCAAAAAGTGGTTCAATATCAAAACCAAATCTGAGGACTTTCAAGCAGATCATGTCATTTCTCAAGTTGTTGATGAAGACTATAGGACCAACAACTACTCAGAGATGGAGGCATGTTCTATCAAAAAAAGCAAAACAGATAGATTAAGCAGAAGATACATAGATAGAATGCAAAGAGGTAAGAGTTACCTTGATGAAGCTCAGGTTACAGATGTATGTAATTATAGAATCTTCGTTGCCACTTGGAATGTGGCTGGGAAGTCACCTCCAAGTTATTTAAGTCTTGAAGAATGGCTTCACATCTCTCCACCTGCTGATATCTATGTTCTCGGGTTTCAAGAAATTGTGCCTCTCAATGCCGGAAATGTTTTGGGAACGGAAGACAATGGTCCTGCAAGAAAATGGCTAGCCCTTATAAGGAAGACACTGAACAACCTTCCAGGAACAAGCGGTGGATACCACACTCCTTCTCCGGTTCCTGCTCCTGTTGTAGAGTTAGATGCTGATTTTGAGGGATCGGTGAGGCAGAAGGCAACCTCGTTCTTCCATCGGAGGTCCTTTCAAGCCATGAGTCGTAGTATGAGAATGGATAATGACATGTCAATCCCACAAACTTGCCTTGATCGCCGTCTCAGTGTCTGCGATAGAATGATATCTGGTCACAGGGCGAGTGACTATGACACCAATTGCCGGTGGGGTTCATCAGACGATGAAAATGGAGCTGACGAATCCCCAATTACAACAGATTATTCGCCAATTTCATATGGTGGCAGTTTCCCTACAGAGGACAGTGAAAGGCCGAGAGGAAATTCGAGATATTGTTTGGTTGCTAGTAAGCAAATGGTAGGTGTATTTCTAACAGTTTGGGTGAAAAGTGATATCAGAGATGATGTTCGTAACATGAAAGTGTCTTGTGTTGGAAGAGGGTTGATGGGATATCTTGGAAACAAGGGTTCTATATCTATTAGTATGTCATTGCGCCAAACAAGTTTTTGCTTCGTCTGTAGTCATTTGACTTCCGGACAAAAGGATGGTGACGAGCTAAGGAGAAATTCCGACGTAATGGAGATTCTTAGAAAGACAAGGTTTCCTCAGGTCCATGACACGAGTGATGCGAATTCTCCTCAGACAATTCTCGAACATGACCGAATAATTTGGATGGGCGATTTAAATTACCGGATAGCGCTGTCGTACTATGGAGCAAAAGCTCTTGTTGAGATGCATGATTGGAAGACTTTGTTAAAGAATGATCAGCTGTGTATAGAGAAATGGCAAGGTCGTGTCTTTACAGGATGGAGTGAAGGGAAAATATATTTCCCTCCCACATATAAGTATTCAAACAACTCGGACAGTTATGCAGGCGATGACAGACGCTCGAAACAAAAGAGAAGAACTCCAGCTTGGTGTGATCGTATCTTGTGGTATGGAAGTGGCCTACAGCAAGTATCTTATGTTCGTGGTGAGTCGAGATTCTCCGACCATAGGCCAGTTTGTAGCATATTCTTGGCAGAAGTTGAGTCTATTAACAGTAACCAAATTATGAAAAGCTCTAACTGCTCCAGTTCCAGGATTGAAGTAGAAGAGTTATTGCCACATTCACATGGTTACGGCTACACTGATTTCCATTTCTATTGA 1689 0.4216 MKDDNLKKTTKLSWTKTLVKKWFNIKTKSEDFQADHVISQVVDEDYRTNNYSEMEACSIKKSKTDRLSRRYIDRMQRGKSYLDEAQVTDVCNYRIFVATWNVAGKSPPSYLSLEEWLHISPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNNLPGTSGGYHTPSPVPAPVVELDADFEGSVRQKATSFFHRRSFQAMSRSMRMDNDMSIPQTCLDRRLSVCDRMISGHRASDYDTNCRWGSSDDENGADESPITTDYSPISYGGSFPTEDSERPRGNSRYCLVASKQMVGVFLTVWVKSDIRDDVRNMKVSCVGRGLMGYLGNKGSISISMSLRQTSFCFVCSHLTSGQKDGDELRRNSDVMEILRKTRFPQVHDTSDANSPQTILEHDRIIWMGDLNYRIALSYYGAKALVEMHDWKTLLKNDQLCIEKWQGRVFTGWSEGKIYFPPTYKYSNNSDSYAGDDRRSKQKRRTPAWCDRILWYGSGLQQVSYVRGESRFSDHRPVCSIFLAEVESINSNQIMKSSNCSSSRIEVEELLPHSHGYGYTDFHFY* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3535 562 Gene3D Endonuclease/exonuclease/phosphatase 72 177 IPR036691 -
Tpr6g3535 562 Gene3D Endonuclease/exonuclease/phosphatase 270 546 IPR036691 -
Tpr6g3535 562 SUPERFAMILY DNase I-like 79 174 IPR036691 -
Tpr6g3535 562 SMART i5p_5 227 527 IPR000300 GO:0016791|GO:0046856
Tpr6g3535 562 Pfam Endonuclease/Exonuclease/phosphatase family 98 512 IPR005135 GO:0003824
Tpr6g3535 562 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 4 561 IPR045849 GO:0004445|GO:0046855
Tpr6g3535 562 PANTHER PHOSPHORIC MONOESTER HYDROLASE-RELATED 4 561 - -
Tpr6g3535 562 SUPERFAMILY DNase I-like 289 538 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3535 Tpr-Chr6 38317751 38322294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3535 294 492 Acyl Lipid Metabolism Gene Families AT2G43900 30.942 2.05e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3535 - - gmx:100803074 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3535 6 38317751 38322294 Tpr6g3535 6 38317751 38322294 ECH
Tpr6g3535 6 38317751 38322294 Tpr1g2031 1 20873267 20877313 PCT