Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3489 ATGGCATCCATTATTACTAGCACCCCTACATCTTCAATCCTCCGCACAGGTCTTGTGCAAAAGCAACCTCTTGGAGTCTCATTCCAGAACATTGTTGGATTGCCAGCAATGACTAAGGTTGGAAGAGTGAGGTGTTCCATTGAAGGAAAGCCTGACGTGCAAGAAAGCAGGTCAAACTTAGGGATGGGAGCATCCTTAATAGCAGCTATCTCTGTTGCAACTTTGTCAAGCCCAGCAGCCATGGCTTTGGTGGATGAAAGACTGAGCACTGAAGGAACTGGACTTCCCTTTGGCCTTAGCAACAACCTTCTTGGTTGGATCTTGTTTGGTGTCTTCGGTTTTATATGGGCACTCTATTTTGTCTATGCTTCATCCCTTGATGAGGATGAAGATTCTGGTTTGTCTCTATAA 411 0.4526 MASIITSTPTSSILRTGLVQKQPLGVSFQNIVGLPAMTKVGRVRCSIEGKPDVQESRSNLGMGASLIAAISVATLSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGFIWALYFVYASSLDEDEDSGLSL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3489 136 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 136 - -
Tpr6g3489 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Tpr6g3489 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3489 Tpr-Chr6 37690027 37691166 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3489 K02721 - gmx:100526966 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3489 6 37690027 37691166 Tpr1g2077 1 21632424 21633603 PCT