Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2077 ATGGCAACCATCTCAGCTACTACTGCAACTGCATCGATCACTCGTGCATGTCTTGTACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTTGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCTTCTGTGCAAGAAAGCAACTCAAAGGTAGGAATGGGAGCATCTATGTTAGCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCTATGGCATTGGTGGATGAAAGAATGAGTACTGAAGGAACAGGACTTCCCTTTGGACTAAGTAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTTGGTCTTATTTGGGCTCTCTATTTTATTTACGCTTCGAGTCTTGAGGAGGATGAAGAATCTGGATTGTCCCTTTAA 414 0.4517 MATISATTATASITRACLVQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVQESNSKVGMGASMLAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2077 137 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Tpr1g2077 137 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 137 - -
Tpr1g2077 137 Pfam Photosystem II reaction centre W protein (PsbW) 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2077 Tpr-Chr1 21632424 21633603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2077 K02721 - gmx:100305788 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2077 1 21632424 21633603 Tpr1g2077 1 21632424 21633603 ECH
Tpr6g3489 6 37690027 37691166 Tpr1g2077 1 21632424 21633603 PCT