Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3428 ATGGTGGGTATTATATCTTTGATAACTGGGATTGCTGGTCCAAGTGGGTTTGGGTCAGCTTCAACAGCAGATCAAGTTACAGAAGGAATTGATGCTAGCAACCTTACCATAATAATCACAGGAGGAGCAAGTGGTATAGGTTTAGAGACAACAAGAGTTTTAGCTCTTAGAAAGGCACATGTCATAATCGGTGCAAGAAACATGGAATCTGCAGAGAAAGGCAAGCAACAAATAACACAAGAGAATAAATCTGCAAGAGTTGACATAATGAAACTGGACCTATGCTCAACTAAATCTGTCAGATCATTTGTCGACAACTTCATTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAATAATGTTCTGCCCCTTCAAGCTATCAGATGAGGGGATTGAGATGCAATTTGCAACAAACCATCTTGGCCATTTCCTCTTAACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAACAACTGGAATAGAGGGAAGGATCATAAATCTATCATCAATTGCTCATAGATACACTTACTGCAGAAAGGGGATTAGATTTGATAAGATCAATGATAAAAAAGGTTATTCTAAGAAGAAGGCCTATGGACAATCCAAGTTAGCCAACATATTACATGCAAATGAACTCTCTCGTCGCCTACAGGAAGAAGGTGTGAACATTACAGCTAATTCTGTCCACCCAGGAGTGATCATGACTCCTCTTATGAGATACTCTTCTTACCTTATGCACTTCTTTAAGATATTCAGCTTTTACATTTGGAAGAACGTTCCACAGGGAGCAGCCACTACATGCTATGTTGCACTTCACCCAAATGTGAAAGGTGTAACTGGAAAGTACTTTGTGGATTGCAATGAACTCAAGCCAAGTGCATTTGCAAAAAATAAACAATTAGCTAAGAAACTTTGGGATTTCAGTAACAAATTGATCAATTCAATTTCAAAAGCTTGA 975 0.3805 MVGIISLITGIAGPSGFGSASTADQVTEGIDASNLTIIITGGASGIGLETTRVLALRKAHVIIGARNMESAEKGKQQITQENKSARVDIMKLDLCSTKSVRSFVDNFIALDLPLNILINNAGIMFCPFKLSDEGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHRYTYCRKGIRFDKINDKKGYSKKKAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRYSSYLMHFFKIFSFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNELKPSAFAKNKQLAKKLWDFSNKLINSISKA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3428 324 Gene3D - 26 321 - -
Tpr6g3428 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Tpr6g3428 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Tpr6g3428 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Tpr6g3428 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Tpr6g3428 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Tpr6g3428 324 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Tpr6g3428 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Tpr6g3428 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Tpr6g3428 324 Coils Coil 68 88 - -
Tpr6g3428 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 297 IPR036291 -
Tpr6g3428 324 Pfam short chain dehydrogenase 36 181 IPR002347 -
Tpr6g3428 324 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 320 - -
Tpr6g3428 324 PANTHER RETINOL DEHYDROGENASE 3 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3428 Tpr-Chr6 37049383 37053906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3428 17 297 Acyl Lipid Metabolism Gene Families AT3G46170 23.891 5.36e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3428 K11153 - gmx:100801849 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3428 6 37049383 37053906 Tpr6g3428 6 37049383 37053906 ECH
Tpr6g3428 6 37049383 37053906 Tpr1g4094 1 46759390 46764568 PCT