Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4094 ATGGTGGGTATTTTCTCGTTGGTCACGGGAATGGTCGGACCTAGCGGATTTGGATCTTCTACAACAGCTGAACAGGTCACTGAAGGAATTGATGCAAGCAACCTCACTATAATTATCACAGGAGGAGCTAGTGGTATAGGGTTAGAGACGGCGCGAGTCTTGGCTCTTCGAAAGGCACATGTCATCATCGCTGCAAGAAACATGGAATCTGCAAAGGAAGCTAAACAACTTATACTAGAGGACAATGAATCCGCTCGAGTGGACACAATGAAGCTCGATCTTTGTTCAATAAAGTCTGTTAGATCATTTGTGGAAAACTTCCTTGCTCTCAATCTTCCTCTCAACATTTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTTTCAACTATCACAAGATGGAATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTTCTGTTGACAAACCTTCTACTCGACAAAATGAAACAAACTGCAAAATCAACTGGAATTGAGGGAAGAATCATAAACCTTTCATCAATTGCTCACACTTACACTTATGAAGAAGGCATTCGATTGGATAACATCAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAATCCAAGTTAGCCAACATATTACACTCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTCAACATCACAGCCAACTCAGTGCACCCAGGAGTAATAATGACTCCTCTTATGAGGCACTCTTCTTTACTTATGAACTTCTTGAAGATGTTCACATTTTTCATATGGAAGAATGTCCCACAGGGAGCTGCAACAACATGCTATGTTGCTCTGCATCCAAGCTTGAAAGGGGTAACTGGGAAGTACTTTTTGGATTGTAATGAGTTTGAACCAAGTGCATTTGCGACAAATGGACTATTAGGAAGAAAACTTTGGGATTTTAGCAACAAGTTGATCAATTCAATTTCAAAAGCTTGA 972 0.4043 MVGIFSLVTGMVGPSGFGSSTTAEQVTEGIDASNLTIIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQLILEDNESARVDTMKLDLCSIKSVRSFVENFLALNLPLNILINNAGVMFCPFQLSQDGIEMQFATNHLGHFLLTNLLLDKMKQTAKSTGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHSNELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFFIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFEPSAFATNGLLGRKLWDFSNKLINSISKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4094 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Tpr1g4094 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Tpr1g4094 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Tpr1g4094 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Tpr1g4094 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Tpr1g4094 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
Tpr1g4094 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Tpr1g4094 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Tpr1g4094 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Tpr1g4094 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Tpr1g4094 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Tpr1g4094 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Tpr1g4094 323 Gene3D - 25 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4094 Tpr-Chr1 46759390 46764568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4094 37 288 Acyl Lipid Metabolism Gene Families AT1G24360 25.097 3.32e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4094 K11153 - gmx:100807056 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3428 6 37049383 37053906 Tpr1g4094 1 46759390 46764568 PCT