Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3419 ATGGGTCAAGGAACACCAGGCGGTTTGAACCGGCAACCGGGCGATCGGAAACCAGACGGAAGCGACAAAAAAGACAAGAAGTTCGAACCAGCCGCACCACCAGCACGCGTAGGTCGTAAACAGCGAAAACAAAAAGGTTCAGAGGCGGCGTCCCGGTTACCGACGGTAACTCCGTTATCGAAGTGTAAACTGAGGCTATTGAAACTTGAACGAATCAAAGATTATTTGTTGATGGAAGAAGAGTTTGTAGCGAATCAGGAACGGCTTAAACCTCAGGAAGAGAAAGCTGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGTTCTCCTATGAGTGTTGGAAATCTTGAAGAGATGATTGATGAGAATCATGCTATTGTTTCGAGTTCTGTTGGTCCTGAATATTATGTTGGGATTTCTTCTTTTGTTGATAAGGATCAGTTGGAACCTGGATGCGCTATTTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGATGTTGATCCAATGGTCTCTGTCATGAAGGTCGAGAAGGCTCCTTTAGAATCATATGCTGACATTGGTGGTTTAGATGCCCAAATACAGGAAATCAAAGAAGCAGTCGAGCTTCCCTTGACACATCCTGAACTGTACGAAGATATTGGTATCAAGCCTCCAAAGGGAGTCATTTTATATGGAGAACCTGGAACCGGGAAGACATTGCTTGCAAAGGCCGTGGCCAACTCAACATCAGCAACATTCTTACGTGTTGTCGGTAGTGAATTGATACAAAAATACTTGGGAGATGGTCCAAAACTTGTGAGAGAACTTTTCCGAGTTGCCGATGATCTTTCTCCTTCTATTGTCTTCATTGATGAAATTGATGCTGTTGGAACAAAAAGGTATGATGCTCACTCAGGTGGAGAGCGTGAAATTCAAAGGACAATGTTGGAGTTGCTAAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTTATTCTCGCAACCAACAAAATTGAAAGCCTCGATCCAGCTTTGCTGCGACCTGGTCGAATAGACAGGAAGATTGAATTTCCTCTCCCTGATATCAAAACAAGGAGACGTATTTTCCAGATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACCGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACACATCCTGACTTTAAGAAAGCAAAAGATAAAGTTATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGATTGTATATGTGA 1335 0.421 MGQGTPGGLNRQPGDRKPDGSDKKDKKFEPAAPPARVGRKQRKQKGSEAASRLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEEMIDENHAIVSSSVGPEYYVGISSFVDKDQLEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNKIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3419 444 MobiDBLite consensus disorder prediction 15 33 - -
Tpr6g3419 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 437 IPR027417 -
Tpr6g3419 444 Gene3D - 111 178 IPR012340 -
Tpr6g3419 444 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 79 431 IPR005937 GO:0005737|GO:0030163|GO:0036402
Tpr6g3419 444 CDD AAA 192 359 - -
Tpr6g3419 444 ProSitePatterns AAA-protein family signature. 329 347 IPR003960 GO:0005524|GO:0016887
Tpr6g3419 444 Pfam ATPase family associated with various cellular activities (AAA) 226 359 IPR003959 GO:0005524|GO:0016887
Tpr6g3419 444 Gene3D - 179 359 IPR027417 -
Tpr6g3419 444 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 17 444 - -
Tpr6g3419 444 Pfam Proteasomal ATPase OB C-terminal domain 113 166 IPR032501 -
Tpr6g3419 444 SMART AAA_5 222 361 IPR003593 -
Tpr6g3419 444 MobiDBLite consensus disorder prediction 1 54 - -
Tpr6g3419 444 PANTHER BNAA08G13550D PROTEIN 17 444 - -
Tpr6g3419 444 Pfam AAA+ lid domain 381 424 IPR041569 -
Tpr6g3419 444 Gene3D - 364 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3419 Tpr-Chr6 36919501 36924540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3419 187 429 Miscellaneous Gene Families AT3G47060 43.952 1.21e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3419 K03062 - gmx:100798835 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3419 6 36919501 36924540 Tpr6g3419 6 36919501 36924540 ECH
Tpr6g3419 6 36919501 36924540 Tpr1g4107 1 47012956 47017416 PCT