Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4107 ATGGGTCAAGGAACTCCCGGCGGCATGAACCGACAAGGTCATCCAGGTGACCGGAAACAAGACGGCAGCGACAAAAAGGAGAAGAAATTCGAACCAGCAGCACCACCGGCACGTGTTGGTCGTAAGCAACGGAAACAAAAGGGTCCAGATGCAGCATCTCGTTTACCGACGGTGACTCCAGTGTCGAAGTGTAAACTGAGGTTGTTAAAGCTTGAGCGTGTTAAGGATTATCTGTTAATGGAGGAAGAGTTTGTAGCGTATCAAGAGCGACTCAAACCTCAGGAAGAGAAGGCGGAAGAAGATAGATCTAAGGTTGATGATCTTCGTGGTTCGCCGATGAGTGTTGGGAACCTTGAAGAATTGATTGATGAGAATCATGCGATTGTTTCGTCTTCGGTTGGACCTGAGTATTATGTTGGGATTTTGTCTTTTGTTGATAAGGATCAATTGGAGCCTGGTTGTGCTATTTTGATGCATAACAAGGTTCTTTCGGTTGTTGGCCTTCTGCAAGATGAAGTTGATCCGATGGTCTCTGTGATGAAGGTTGAGAAGGCTCCTTTGGAATCTTATGCTGACATCGGTGGTTTAGATGCACAGATACAGGAAATTAAAGAGGCAGTTGAGCTGCCCCTGACACATCCTGAACTATATGAAGATATTGGGATTAAGCCTCCTAAGGGGGTCATATTATACGGAGAACCTGGAACAGGAAAGACCTTGCTTGCAAAGGCTGTGGCAAACTCAACATCAGCGACATTCTTGCGTGTAGTTGGCAGTGAATTGATACAAAAGTACCTGGGAGATGGTCCGAAACTTGTAAGGGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTTTTCATTGATGAAATTGATGCGGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAGCGTGAAATTCAAAGGACTATGTTAGAGTTACTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTTAAAGTAATTCTGGCTACCAACAGAATTGAAAGTCTTGATCCGGCTTTGCTACGACCTGGTCGTATTGACAGGAAGATTGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATTTTTCAGATACACACATCAAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACCAAGGATGAATTCTCTGGAGCTGATATAAAGGCAATATGCACTGAAGCTGGTTTACTTGCTCTACGGGAACGCCGAATGAAGGTGACTCATCCTGACTTTAAGAAGGCAAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGAGTGCCAGAAGGACTATATATGTGA 1341 0.4355 MGQGTPGGMNRQGHPGDRKQDGSDKKEKKFEPAAPPARVGRKQRKQKGPDAASRLPTVTPVSKCKLRLLKLERVKDYLLMEEEFVAYQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4107 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 86 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
Tpr1g4107 446 Pfam AAA+ lid domain 383 426 IPR041569 -
Tpr1g4107 446 Gene3D - 113 180 IPR012340 -
Tpr1g4107 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
Tpr1g4107 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 446 - -
Tpr1g4107 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Tpr1g4107 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Tpr1g4107 446 MobiDBLite consensus disorder prediction 1 56 - -
Tpr1g4107 446 Gene3D - 366 440 - -
Tpr1g4107 446 MobiDBLite consensus disorder prediction 14 35 - -
Tpr1g4107 446 PANTHER BNAA08G13550D PROTEIN 18 446 - -
Tpr1g4107 446 CDD AAA 194 361 - -
Tpr1g4107 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Tpr1g4107 446 Gene3D - 181 361 IPR027417 -
Tpr1g4107 446 SMART AAA_5 224 363 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4107 Tpr-Chr1 47012956 47017416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4107 189 431 Miscellaneous Gene Families AT3G47060 44.355 4.34e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4107 K03062 - jre:108990723 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3419 6 36919501 36924540 Tpr1g4107 1 47012956 47017416 PCT