Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2752 ATGGACAAGCTAAGTCAATATGAACGTGTATTCAAACGGTTTGATGAAAATGGAGATGGCAAGATATCGCCGGATGAGCTACGGCAATGCGTTGAGGCTATCGGTGATGAGAAGTTATCGGCGAAGGATGTAGAGGCGGCGGTAACAACTTTGGATTCGGACGGAGATGGATTGTTGGGGTTTGATGATTTTGTGAAGTTTGTGGAAGGAGTAAAAGAGGAAGATAAAGTGAATGACTTGAAAGAGGCTTTTAAGTTGTATGATATGGATGGAAGTGGTTGCATCACACCAAGGAGTCTTAAGAGAATGCTTAGTAAGTTAGGTGATTCAAGAAGTATAGATGATTGTCAACTTATGATCTCTAAGTTTGATCTTGATGGGGATGGGAAAATCAGTTTTGATGAATTTAAGGTAATGATGTTGTAA 426 0.3991 MDKLSQYERVFKRFDENGDGKISPDELRQCVEAIGDEKLSAKDVEAAVTTLDSDGDGLLGFDDFVKFVEGVKEEDKVNDLKEAFKLYDMDGSGCITPRSLKRMLSKLGDSRSIDDCQLMISKFDLDGDGKISFDEFKVMML* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2752 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Tpr6g2752 141 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Tpr6g2752 141 Pfam EF-hand domain pair 6 68 IPR002048 GO:0005509
Tpr6g2752 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Tpr6g2752 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 141 - -
Tpr6g2752 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Tpr6g2752 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Tpr6g2752 141 Gene3D - 73 141 - -
Tpr6g2752 141 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Tpr6g2752 141 SMART efh_1 115 141 IPR002048 GO:0005509
Tpr6g2752 141 SMART efh_1 6 34 IPR002048 GO:0005509
Tpr6g2752 141 SMART efh_1 79 107 IPR002048 GO:0005509
Tpr6g2752 141 SMART efh_1 43 71 IPR002048 GO:0005509
Tpr6g2752 141 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Tpr6g2752 141 Gene3D - 1 72 - -
Tpr6g2752 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 141 - -
Tpr6g2752 141 SUPERFAMILY EF-hand 4 141 IPR011992 -
Tpr6g2752 141 CDD EFh 79 140 IPR002048 GO:0005509
Tpr6g2752 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2752 Tpr-Chr6 30051731 30052466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2752 2 140 EF-hand Containing Proteins AT1G76650 51.799 1.34e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2752 K13448 - gmx:100783575 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2752 6 30051731 30052466 Tpr5g0341 5 5150618 5151611 PCT