Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0341 ATGGACGTCATGGACAAGGTGAGTCAATATATACGTGTGTTCAATCACTTTGATGAAAATGGAGATGGAAAAATATCGCCGTCTGAGCTACGGCAATGTGTGGAAGCAATCGGGGGCAAGATGTCGAATGAGGAGGCGGAAGTAGCGGTGGAGCTTCTCGACTCAGACAGAGATGGGTTATTTGGGTTGGATGATTTTGTGAGATTTGTAGAGGGAGGAAAAGAGGAAGAAAAAGTGAATGACTTAAGAGAGGCTTTTAAGATGTATGAAATGGAAGGGTTTGGTTGCATCACACCAAAGAGTTTAAAGAGAATGCTTGGAAGATTGGGTGAATGTAGAAGTGTTGATGAATGTCAAGCTATGATTGCTAAATTTGATATTGATGGAGATGGGATGCTTAGTTTTGATGAATTTAGGGCAATGATGCTTTAA 432 0.4097 MDVMDKVSQYIRVFNHFDENGDGKISPSELRQCVEAIGGKMSNEEAEVAVELLDSDRDGLFGLDDFVRFVEGGKEEEKVNDLREAFKMYEMEGFGCITPKSLKRMLGRLGECRSVDECQAMIAKFDIDGDGMLSFDEFRAMML* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0341 143 Pfam EF-hand domain pair 95 142 IPR002048 GO:0005509
Tpr5g0341 143 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Tpr5g0341 143 ProSiteProfiles EF-hand calcium-binding domain profile. 113 143 IPR002048 GO:0005509
Tpr5g0341 143 CDD EFh 12 70 IPR002048 GO:0005509
Tpr5g0341 143 CDD EFh 81 142 IPR002048 GO:0005509
Tpr5g0341 143 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Tpr5g0341 143 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 143 - -
Tpr5g0341 143 SUPERFAMILY EF-hand 7 143 IPR011992 -
Tpr5g0341 143 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Tpr5g0341 143 SMART efh_1 117 143 IPR002048 GO:0005509
Tpr5g0341 143 SMART efh_1 81 109 IPR002048 GO:0005509
Tpr5g0341 143 SMART efh_1 9 37 IPR002048 GO:0005509
Tpr5g0341 143 SMART efh_1 45 73 IPR002048 GO:0005509
Tpr5g0341 143 Gene3D - 73 143 - -
Tpr5g0341 143 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 143 - -
Tpr5g0341 143 ProSitePatterns EF-hand calcium-binding domain. 18 30 IPR018247 -
Tpr5g0341 143 Gene3D - 2 72 - -
Tpr5g0341 143 Pfam EF-hand domain pair 11 70 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0341 Tpr-Chr5 5150618 5151611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0341 5 142 EF-hand Containing Proteins AT1G76650 47.101 6.02e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0341 K13448 - fve:105352384 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0341 5 5150618 5151611 Tpr5g0341 5 5150618 5151611 ECH
Tpr6g2752 6 30051731 30052466 Tpr5g0341 5 5150618 5151611 PCT