Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2239 ATGCAGCACAACATCCTGGCTTCGATCCGTAGCACGAAAATCACGGATGGTTGTAAAGGCACTCAAGTCTACGCTCTTAACTCCTCCGTCGGCGCCGATCCTCCGATCAACGCCGGCGGTGGAGAATCCATCGGAGACAAATTCTTTCATCATTTACTAGACCGGTCTAAACAATCCGGTCGAATCAAACCGGTTGGTACAAAAACGGCGACACGCGACGTCGTTTTGGAGAGTCTCCTCCCTTATGGCCTTCCTTTGTCGGAGCTTCTAGAACCTTCGATCGAGCCTTATTTGAAGCCTATTGATTTGGTTGAAACCCTTGCCGGCGTGCATCGCCGGATCGTGAGTTCTGGTGAGGATGGGAAATTTGAGGCGTTTTTGGAGCAGTGCTCGGTGTTTAGGGGATTTCCTGATGCTAAATTGTTCCGGCGGAGTCTCCGGTTGGCGCGGCAGCATGCGGTGGATGTGCACTCCAAGGTTGTGATGGCTTCGTGGTTGAGGTATGAGAGGAGAGAGGATGAATTTGATGGATCTTCAGCAATGGATTGTTGTGGAAGAAACCTTGAATGCCCCAAGGCTAGTTTGATCACAGGGTATGATCCTGAATCTGGTTTTGGTCATTGTTCGTGTTTTCGAAAAGATAATGTTATTGTTGACAATGATGATGTTGATGGTGGTGGGAAAATTGAATGCTCAACTTCTTATGGAAATGAGGATGATCGTAGTGGTAGCGGTGATGGTGGTTACCATGATATATCTTTTTGTATAGGTGATAGTGATATTAGGTGTAATAGATACTCAATGGCCTCGCTTTCGAGGCCGTTTATGGCAATGTTATATGGTGGATTTGTTGAGTCTAGGAGGGAGAAGATTAATTTCTCCCTGAATGGTGTATCTGTTGATGTGATGATGGCTGTTGAGGTTTTTAGTAGAACCAAGAGGTTGAGTCTATTTGCAAATAATGTTGTTGTAGAGATGCTTTCTTTTGCGAATAGGTTTTGTTGTGAGGAGATGAAATCTGCTTGTGATGCTCATTTGGCTTCTTTGGTATTCGACATGGATGATGCATTGTTGTTGATTGAGTATGGACTGGAGGAGACTGCGCATCTGGTCGTGGCAGCTTGCTTGCAGGTGTTTCTGAGAGAGCTTCCTAGTTCGATGCACAGTTTGAGTGTTTCGAAATTGTTTTGTAGTGTAGAGGGTAGAGATAGATTGGCCTTGGTAGGGCATGTTTCGTTTTCGCTGTATTGTTTTTTGAGTCAGGTTGCAATGGAGGAAGATATGAAATCTAACACGACTGTGATGCTCTTAGAGAGGTTAGGAGAGTGTGCGGCGAGTGGTTGGCAGAAGCAATTTGCTTATCACCAATTAGGTGTTGTGATGCTTGAAAGAAAAGAATACAAAGATGCACAACAGTGGTTTGAGGCTGCTGTTAAGGAAGGACATATTTATTCTTCAGTGGGTGTTGCAAGGGCCAAGTATAAACGCGGTCACACATATTCAGCATACAAGATGATAAACTCCCTTATTTCTGATCATAAACCTGTTGGTTGGATGTATCAGGAAAGGGCTTTATATTGCATTGGGAAGGAAAAAACGATAGACTTGGTCTCTGCAACTGAATTAGATCCAACTCTTTCATATCCATACAAACACCGAGCTGTGTTTTTGGTGGAGGAGAGTAAGATTGAAGCTGCCATTTCAGAAATCAATAAAATAATTGGTTTCAAGATTTCTACTGACTGCCTTGAACTGAGAGCTTGGTTCTTGATTGCCATGAAGGATTATGAAGGAGCCCTTAGGGATGTCAGGGCAATTTTGACATTGGATCCAAATTATAAGATGTTCTATGGGAAAATGCAAGGCGATCGCTTGGTAGAACTCCTCCGCCCTGTTGCTCAGCAGTGGAACCAGGCTGATTGCTGGATGCAATTGTATGACAATTGGTCTTCCGTTGATGATATTGGTTCTTTGGCTGTTGTACACCAGATGTTGGAGAACAACCCGGGGAAAAGCATTTTACGCTTTCGGCAATCTCTACTCCTTTTAAGGTTAAATTGTCAAAAGGTAGCCATGCGTAGTTTGCGTCTGGCTAGAAATCATTCTTCTTCAACACATGAAAGACTTATCTATGAAGGATGGATATTGTATGACACTGGCCATCGTGAAGAAGCTATAGCAAAGGCCGACGAGTCAATTTCTATTCAAAGGTCATTTGAAGCTTTCTTTCTAAAAGCTTATGCTTTAGCTGACTCATGTCTTGATTCCGAGTCTTCAAAGAATGTGATTGATCTCTTGGAGGAAGCTCTTAGATGCCCTTCAGATGGTCTTCGGAAGGGACAAGCACTAAATAATTTAGGGAGTATTTATGTTGATTGTGAAAAGCTAGACCTTGCTGCTGACTGCTACAAGCATGCACTTAACATCAAGCATACACGAGCACATCAGGGGTTAGCACGTGTATACCATCTTCAGAATCAGCCCAAAGCAGCATATGATGAGATGACAAAGTTAATAGAAAAGGCCAAGAATAACGCATCAGCATATGAGAAGCGGTCAGAATATTGTGATCGTGACATGGCAAAGGGAGATCTTAGTTTGGCAACACAGTTGGATCCTCTAAGAACATATCCCTATAGATATAGGGCGGCAGTTTTAATGGACGATCGCAAGGAAGCTGACGCAATTGCAGAGCTTTCAAGGGCCATCAACTTCAAGCCAGAACTGCAACTGTTACATCTTCGAGCAGCATTTTATGATTCAATGGGTGATTTTGTTTCTACTGTCCGAGACTGTGAAGCGGCCCTTTGTCTTGATCCTAGCCATGCTGAGATGTTAGAGCTTTGTAATAAAGCCCGGGAGCAAGTTACTGATGTAAAATGA 2883 0.435 MQHNILASIRSTKITDGCKGTQVYALNSSVGADPPINAGGGESIGDKFFHHLLDRSKQSGRIKPVGTKTATRDVVLESLLPYGLPLSELLEPSIEPYLKPIDLVETLAGVHRRIVSSGEDGKFEAFLEQCSVFRGFPDAKLFRRSLRLARQHAVDVHSKVVMASWLRYERREDEFDGSSAMDCCGRNLECPKASLITGYDPESGFGHCSCFRKDNVIVDNDDVDGGGKIECSTSYGNEDDRSGSGDGGYHDISFCIGDSDIRCNRYSMASLSRPFMAMLYGGFVESRREKINFSLNGVSVDVMMAVEVFSRTKRLSLFANNVVVEMLSFANRFCCEEMKSACDAHLASLVFDMDDALLLIEYGLEETAHLVVAACLQVFLRELPSSMHSLSVSKLFCSVEGRDRLALVGHVSFSLYCFLSQVAMEEDMKSNTTVMLLERLGECAASGWQKQFAYHQLGVVMLERKEYKDAQQWFEAAVKEGHIYSSVGVARAKYKRGHTYSAYKMINSLISDHKPVGWMYQERALYCIGKEKTIDLVSATELDPTLSYPYKHRAVFLVEESKIEAAISEINKIIGFKISTDCLELRAWFLIAMKDYEGALRDVRAILTLDPNYKMFYGKMQGDRLVELLRPVAQQWNQADCWMQLYDNWSSVDDIGSLAVVHQMLENNPGKSILRFRQSLLLLRLNCQKVAMRSLRLARNHSSSTHERLIYEGWILYDTGHREEAIAKADESISIQRSFEAFFLKAYALADSCLDSESSKNVIDLLEEALRCPSDGLRKGQALNNLGSIYVDCEKLDLAADCYKHALNIKHTRAHQGLARVYHLQNQPKAAYDEMTKLIEKAKNNASAYEKRSEYCDRDMAKGDLSLATQLDPLRTYPYRYRAAVLMDDRKEADAIAELSRAINFKPELQLLHLRAAFYDSMGDFVSTVRDCEAALCLDPSHAEMLELCNKAREQVTDVK* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2239 960 ProSiteProfiles TPR repeat profile. 780 813 IPR019734 GO:0005515
Tpr6g2239 960 SMART tpr_5 706 739 IPR019734 GO:0005515
Tpr6g2239 960 SMART tpr_5 580 613 IPR019734 GO:0005515
Tpr6g2239 960 SMART tpr_5 909 942 IPR019734 GO:0005515
Tpr6g2239 960 SMART tpr_5 780 813 IPR019734 GO:0005515
Tpr6g2239 960 SUPERFAMILY TPR-like 452 699 IPR011990 GO:0005515
Tpr6g2239 960 Gene3D Potassium Channel Kv1.1; Chain A 244 389 IPR011333 -
Tpr6g2239 960 Gene3D Tetratricopeptide repeat domain 655 859 IPR011990 GO:0005515
Tpr6g2239 960 Gene3D Tetratricopeptide repeat domain 860 960 IPR011990 GO:0005515
Tpr6g2239 960 Gene3D Tetratricopeptide repeat domain 437 619 IPR011990 GO:0005515
Tpr6g2239 960 SUPERFAMILY TPR-like 707 909 IPR011990 GO:0005515
Tpr6g2239 960 Coils Coil 832 852 - -
Tpr6g2239 960 Pfam Tetratricopeptide repeat 781 809 IPR019734 GO:0005515
Tpr6g2239 960 PANTHER ETO1-RELATED 1 957 IPR044631 GO:0010105
Tpr6g2239 960 SUPERFAMILY POZ domain 247 347 IPR011333 -
Tpr6g2239 960 PANTHER ETHYLENE-OVERPRODUCTION PROTEIN 1 1 957 - -
Tpr6g2239 960 SMART BTB_4 250 350 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2239 Tpr-Chr6 24358213 24364591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2239 781 950 Glycosyltransferase AT3G04240 28.729 7.76e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2239 - - rcu:8278935 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2239 6 24358213 24364591 Tpr4g0692 4 6373846 6379301 PCT